Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 PTPRT-209ENST00000612229 11285 ntTSL 5 BASIC3.8□□□□□ -1.8
COL6A3P12111 AC062016.1-201ENST00000355719 319 ntBASIC3.8□□□□□ -1.8
COL6A3P12111 HMGB1P5-202ENST00000451497 985 ntBASIC3.8□□□□□ -1.8
COL6A3P12111 AC103808.1-201ENST00000579833 922 ntTSL 3 BASIC3.8□□□□□ -1.8
COL6A3P12111 AC018692.3-201ENST00000623929 123 ntBASIC3.8□□□□□ -1.8
COL6A3P12111 ESRRG-208ENST00000391890 5542 ntAPPRIS P1 TSL 5 BASIC3.8□□□□□ -1.8
COL6A3P12111 TSPAN14-207ENST00000429989 16183 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
COL6A3P12111 AC126323.6-202ENST00000568092 3511 ntBASIC3.8□□□□□ -1.8
COL6A3P12111 OR2M3-202ENST00000641626 9913 ntAPPRIS P1 BASIC3.8□□□□□ -1.8
COL6A3P12111 TRAV36DV7-201ENST00000390463 356 ntAPPRIS P1 BASIC3.79□□□□□ -1.8
COL6A3P12111 SNORD66.1-201ENST00000391230 76 ntBASIC3.79□□□□□ -1.8
COL6A3P12111 AL391417.1-201ENST00000404100 426 ntBASIC3.79□□□□□ -1.8
COL6A3P12111 BX119904.3-201ENST00000428194 957 ntBASIC3.79□□□□□ -1.8
COL6A3P12111 AL445433.1-201ENST00000457507 257 ntBASIC3.79□□□□□ -1.8
COL6A3P12111 RN7SKP132-201ENST00000516001 208 ntBASIC3.79□□□□□ -1.8
COL6A3P12111 AC095350.2-201ENST00000544034 201 ntTSL 5 BASIC3.79□□□□□ -1.8
COL6A3P12111 GTF3AP2-201ENST00000557014 266 ntBASIC3.79□□□□□ -1.8
COL6A3P12111 AC027216.1-201ENST00000577726 685 ntBASIC3.79□□□□□ -1.8
COL6A3P12111 ENPP3-201ENST00000357639 3162 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
COL6A3P12111 UACA-211ENST00000560441 4723 ntAPPRIS ALT2 TSL 5 BASIC3.79□□□□□ -1.8
COL6A3P12111 KCNH5-201ENST00000322893 11290 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
COL6A3P12111 RASGEF1B-207ENST00000509081 3016 ntAPPRIS ALT1 TSL 5 BASIC3.79□□□□□ -1.8
COL6A3P12111 CRISPLD1-205ENST00000523524 2100 ntTSL 2 BASIC3.79□□□□□ -1.8
COL6A3P12111 AC018529.3-201ENST00000624212 2254 ntBASIC3.79□□□□□ -1.8
COL6A3P12111 ZMYM6-201ENST00000317538 2702 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
COL6A3P12111 LYRM7-201ENST00000379380 6351 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
COL6A3P12111 SLC30A7-201ENST00000357650 1281 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
COL6A3P12111 AL080315.1-201ENST00000406055 466 ntBASIC3.79□□□□□ -1.8
COL6A3P12111 snoU13.15-201ENST00000459407 104 ntBASIC3.79□□□□□ -1.8
COL6A3P12111 AC087463.3-201ENST00000570105 415 ntTSL 3 BASIC3.79□□□□□ -1.8
COL6A3P12111 AC064801.1-201ENST00000612025 407 ntBASIC3.79□□□□□ -1.8
COL6A3P12111 AC124312.6-202ENST00000623624 418 ntBASIC3.79□□□□□ -1.8
COL6A3P12111 AC139713.2-210ENST00000641741 992 ntBASIC3.79□□□□□ -1.8
COL6A3P12111 KMT2A-213ENST00000534358 16602 ntAPPRIS ALT2 TSL 1 (best) BASIC3.79□□□□□ -1.8
COL6A3P12111 OR2A5-202ENST00000641693 8681 ntAPPRIS P1 BASIC3.79□□□□□ -1.8
COL6A3P12111 MDM4-205ENST00000391947 10008 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
COL6A3P12111 RIMS2-201ENST00000262231 3854 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
COL6A3P12111 PSD3-219ENST00000614430 6136 ntTSL 5 BASIC3.79□□□□□ -1.8
COL6A3P12111 UNC79-203ENST00000553484 9100 ntTSL 5 BASIC3.79□□□□□ -1.8
COL6A3P12111 DDX18P4-201ENST00000511690 1966 ntBASIC3.79□□□□□ -1.8
COL6A3P12111 ZFX-203ENST00000379177 7558 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
COL6A3P12111 TRAJ18-201ENST00000390519 66 ntAPPRIS P1 BASIC3.79□□□□□ -1.8
COL6A3P12111 AC010740.1-201ENST00000417035 684 ntBASIC3.79□□□□□ -1.8
COL6A3P12111 HSD52-202ENST00000436225 772 ntTSL 3 BASIC3.79□□□□□ -1.8
COL6A3P12111 AC105272.1-201ENST00000438604 198 ntBASIC3.79□□□□□ -1.8
COL6A3P12111 AL109933.2-201ENST00000452651 260 ntBASIC3.79□□□□□ -1.8
COL6A3P12111 LINC01150-201ENST00000455671 315 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
COL6A3P12111 RN7SKP244-201ENST00000516513 307 ntBASIC3.79□□□□□ -1.8
COL6A3P12111 AC006349.1-201ENST00000555526 235 ntBASIC3.79□□□□□ -1.8
COL6A3P12111 AC012417.1-201ENST00000582307 1039 ntBASIC3.79□□□□□ -1.8
COL6A3P12111 AC138907.10-201ENST00000623708 983 ntBASIC3.79□□□□□ -1.8
COL6A3P12111 ICE2-201ENST00000261520 7209 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
COL6A3P12111 PGBD4-201ENST00000397766 6612 ntAPPRIS P1 BASIC3.79□□□□□ -1.8
COL6A3P12111 CEP170-215ENST00000481987 3031 ntTSL 5 BASIC3.78□□□□□ -1.8
COL6A3P12111 AC000374.1-201ENST00000434698 1745 ntBASIC3.78□□□□□ -1.8
COL6A3P12111 GJC1-202ENST00000426548 7640 ntAPPRIS P1 TSL 3 BASIC3.78□□□□□ -1.8
COL6A3P12111 AP001273.1-201ENST00000624493 3152 ntBASIC3.78□□□□□ -1.8
COL6A3P12111 PDE4D-226ENST00000546160 7690 ntTSL 5 BASIC3.78□□□□□ -1.8
COL6A3P12111 RNU6ATAC15P-201ENST00000408279 121 ntBASIC3.78□□□□□ -1.8
COL6A3P12111 Z99755.1-201ENST00000414048 380 ntBASIC3.78□□□□□ -1.8
COL6A3P12111 HCG2040054-201ENST00000435331 434 ntTSL 3 BASIC3.78□□□□□ -1.8
COL6A3P12111 HMGB1P37-201ENST00000439613 609 ntBASIC3.78□□□□□ -1.8
COL6A3P12111 ASH1L-IT1-201ENST00000458371 448 ntTSL 5 BASIC3.78□□□□□ -1.8
COL6A3P12111 RPL23AP37-201ENST00000479658 549 ntBASIC3.78□□□□□ -1.8
COL6A3P12111 AC093534.2-201ENST00000511418 420 ntTSL 3 BASIC3.78□□□□□ -1.8
COL6A3P12111 SUB1-211ENST00000512913 684 ntAPPRIS P1 TSL 2 BASIC3.78□□□□□ -1.8
COL6A3P12111 AC024603.1-201ENST00000597938 592 ntTSL 4 BASIC3.78□□□□□ -1.8
COL6A3P12111 ADARB1-213ENST00000611195 159 ntTSL 5 BASIC3.78□□□□□ -1.8
COL6A3P12111 A1CF-206ENST00000395489 9517 ntTSL 2 BASIC3.78□□□□□ -1.8
COL6A3P12111 KCNA2-209ENST00000639048 10836 ntTSL 5 BASIC3.78□□□□□ -1.8
COL6A3P12111 OR4K13-202ENST00000641664 5980 ntAPPRIS P1 BASIC3.78□□□□□ -1.8
COL6A3P12111 STIL-204ENST00000396221 4558 ntAPPRIS ALT2 TSL 1 (best) BASIC3.78□□□□□ -1.8
COL6A3P12111 AL022393.1-201ENST00000625142 1677 ntBASIC3.78□□□□□ -1.8
COL6A3P12111 AC011755.1-201ENST00000623763 2049 ntBASIC3.78□□□□□ -1.8
COL6A3P12111 ZC3H11A-202ENST00000367210 5877 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
COL6A3P12111 UNC79-202ENST00000393151 7908 ntTSL 5 BASIC3.78□□□□□ -1.8
COL6A3P12111 DCAF13P3-201ENST00000561147 1334 ntBASIC3.78□□□□□ -1.8
COL6A3P12111 FAM26E-201ENST00000368599 9784 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
COL6A3P12111 TXN-201ENST00000374515 635 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
COL6A3P12111 AL031679.1-201ENST00000400616 525 ntBASIC3.78□□□□□ -1.8
COL6A3P12111 AC069540.2-201ENST00000441776 351 ntTSL 3 BASIC3.78□□□□□ -1.8
COL6A3P12111 AC090013.1-201ENST00000485147 480 ntBASIC3.78□□□□□ -1.8
COL6A3P12111 AC008780.1-201ENST00000513392 409 ntTSL 5 BASIC3.78□□□□□ -1.8
COL6A3P12111 THUMPD3-AS1-210ENST00000519043 1115 ntTSL 3 BASIC3.78□□□□□ -1.8
COL6A3P12111 LINC01339-203ENST00000519336 561 ntTSL 3 BASIC3.78□□□□□ -1.8
COL6A3P12111 AC006116.9-201ENST00000591630 649 ntTSL 5 BASIC3.78□□□□□ -1.8
COL6A3P12111 CCNYL2-203ENST00000638057 730 ntTSL 3 BASIC3.78□□□□□ -1.8
COL6A3P12111 APAF1-208ENST00000549007 3492 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
COL6A3P12111 TRIM38-201ENST00000357085 9413 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
COL6A3P12111 ATP2C1-210ENST00000505330 4888 ntAPPRIS ALT2 TSL 2 BASIC3.78□□□□□ -1.8
COL6A3P12111 MAPK10-371ENST00000641952 5209 ntBASIC3.78□□□□□ -1.8
COL6A3P12111 LPAR6-209ENST00000620633 2175 ntAPPRIS P1 TSL 5 BASIC3.78□□□□□ -1.8
COL6A3P12111 AC104446.1-201ENST00000613728 1321 ntBASIC3.78□□□□□ -1.81
COL6A3P12111 DDX60-201ENST00000393743 6071 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
COL6A3P12111 UBE4A-202ENST00000431736 6061 ntAPPRIS P3 TSL 1 (best) BASIC3.77□□□□□ -1.81
COL6A3P12111 S100A11P1-201ENST00000477525 312 ntBASIC3.77□□□□□ -1.81
COL6A3P12111 AL049874.2-201ENST00000492636 288 ntBASIC3.77□□□□□ -1.81
COL6A3P12111 AP001318.2-201ENST00000533378 492 ntTSL 3 BASIC3.77□□□□□ -1.81
COL6A3P12111 AC079171.1-201ENST00000568788 914 ntBASIC3.77□□□□□ -1.81
COL6A3P12111 AC005899.4-201ENST00000581915 514 ntTSL 4 BASIC3.77□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 114.9 ms