Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 LINC00400-201ENST00000425609 547 ntTSL 3 BASIC4.9□□□□□ -1.63
USP41Q3LFD5 LINC01400-201ENST00000426358 947 ntTSL 3 BASIC4.9□□□□□ -1.63
USP41Q3LFD5 VDAC1P6-201ENST00000430062 855 ntBASIC4.9□□□□□ -1.63
USP41Q3LFD5 AL590999.1-204ENST00000430595 638 ntTSL 3 BASIC4.9□□□□□ -1.63
USP41Q3LFD5 AL589765.3-201ENST00000446084 462 ntBASIC4.9□□□□□ -1.63
USP41Q3LFD5 NPM1P39-201ENST00000449818 867 ntBASIC4.9□□□□□ -1.63
USP41Q3LFD5 snoU109.3-201ENST00000459477 145 ntBASIC4.9□□□□□ -1.63
USP41Q3LFD5 CNOT10-AS1-201ENST00000475395 466 ntTSL 3 BASIC4.9□□□□□ -1.63
USP41Q3LFD5 DEFB109F-201ENST00000491870 277 ntBASIC4.9□□□□□ -1.63
USP41Q3LFD5 AL049544.1-201ENST00000511849 673 ntTSL 3 BASIC4.9□□□□□ -1.63
USP41Q3LFD5 AL035078.3-201ENST00000525382 241 ntTSL 3 BASIC4.9□□□□□ -1.63
USP41Q3LFD5 AC109630.1-202ENST00000560552 579 ntTSL 4 BASIC4.9□□□□□ -1.63
USP41Q3LFD5 NPM1P47-201ENST00000560843 856 ntBASIC4.9□□□□□ -1.63
USP41Q3LFD5 AC100872.1-201ENST00000577765 501 ntTSL 5 BASIC4.9□□□□□ -1.63
USP41Q3LFD5 RN7SL176P-201ENST00000580352 264 ntBASIC4.9□□□□□ -1.63
USP41Q3LFD5 AC023575.1-201ENST00000580510 358 ntBASIC4.9□□□□□ -1.63
USP41Q3LFD5 AC005537.1-201ENST00000588324 1238 ntTSL 1 (best) BASIC4.9□□□□□ -1.63
USP41Q3LFD5 OR7A5-202ENST00000594432 1029 ntAPPRIS P1 BASIC4.9□□□□□ -1.63
USP41Q3LFD5 AC092902.2-202ENST00000599350 686 ntTSL 3 BASIC4.9□□□□□ -1.63
USP41Q3LFD5 AC020910.2-201ENST00000603635 610 ntBASIC4.9□□□□□ -1.63
USP41Q3LFD5 AP002802.2-201ENST00000605877 235 ntBASIC4.9□□□□□ -1.63
USP41Q3LFD5 RDM1-215ENST00000612980 501 ntTSL 1 (best) BASIC4.9□□□□□ -1.63
USP41Q3LFD5 AC022079.2-201ENST00000619739 566 ntBASIC4.9□□□□□ -1.63
USP41Q3LFD5 AC011944.2-201ENST00000624440 683 ntBASIC4.9□□□□□ -1.63
USP41Q3LFD5 ERGIC2-201ENST00000360150 5014 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.63
USP41Q3LFD5 ZC3H14-215ENST00000555900 1762 ntTSL 5 BASIC4.9□□□□□ -1.63
USP41Q3LFD5 MYB-226ENST00000528774 2277 ntAPPRIS ALT1 TSL 1 (best) BASIC4.9□□□□□ -1.63
USP41Q3LFD5 OR51H2P-202ENST00000641424 3046 ntBASIC4.9□□□□□ -1.63
USP41Q3LFD5 USP8-202ENST00000396444 19026 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.63
USP41Q3LFD5 OR5B12-202ENST00000641921 1807 ntAPPRIS P1 BASIC4.9□□□□□ -1.63
USP41Q3LFD5 RBMS1-202ENST00000392753 3781 ntTSL 5 BASIC4.9□□□□□ -1.63
USP41Q3LFD5 RMST-202ENST00000541282 2099 ntTSL 2 BASIC4.9□□□□□ -1.63
USP41Q3LFD5 LINC01239-202ENST00000436786 2347 ntTSL 2 BASIC4.9□□□□□ -1.63
USP41Q3LFD5 MFSD8-242ENST00000641690 4199 ntBASIC4.9□□□□□ -1.63
USP41Q3LFD5 CDH17-201ENST00000027335 3693 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.63
USP41Q3LFD5 KIF3A-203ENST00000403231 2181 ntTSL 2 BASIC4.89□□□□□ -1.63
USP41Q3LFD5 DCDC1-211ENST00000597505 5352 ntAPPRIS ALT2 TSL 5 BASIC4.89□□□□□ -1.63
USP41Q3LFD5 IL23R-202ENST00000395227 1459 ntTSL 3 BASIC4.89□□□□□ -1.63
USP41Q3LFD5 CPXCR1-203ENST00000614120 1485 ntAPPRIS P1 TSL 3 BASIC4.89□□□□□ -1.63
USP41Q3LFD5 CEP112-204ENST00000537949 2847 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
USP41Q3LFD5 RN7SKP227-201ENST00000364445 330 ntBASIC4.89□□□□□ -1.63
USP41Q3LFD5 KRTAP3-2-201ENST00000391587 702 ntAPPRIS P1 BASIC4.89□□□□□ -1.63
USP41Q3LFD5 RPL23AP59-201ENST00000399415 461 ntBASIC4.89□□□□□ -1.63
USP41Q3LFD5 AP000357.1-201ENST00000409926 1165 ntBASIC4.89□□□□□ -1.63
USP41Q3LFD5 RNU6-584P-201ENST00000410350 95 ntBASIC4.89□□□□□ -1.63
USP41Q3LFD5 AC093158.1-201ENST00000415549 791 ntTSL 3 BASIC4.89□□□□□ -1.63
USP41Q3LFD5 AL590727.1-201ENST00000418652 771 ntTSL 2 BASIC4.89□□□□□ -1.63
USP41Q3LFD5 AL136980.1-201ENST00000426764 543 ntTSL 3 BASIC4.89□□□□□ -1.63
USP41Q3LFD5 AC114973.1-201ENST00000429057 632 ntBASIC4.89□□□□□ -1.63
USP41Q3LFD5 NUDT7-202ENST00000437314 930 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
USP41Q3LFD5 AL162384.1-201ENST00000437881 499 ntTSL 2 BASIC4.89□□□□□ -1.63
USP41Q3LFD5 ARF4P4-201ENST00000439608 520 ntBASIC4.89□□□□□ -1.63
USP41Q3LFD5 CBX1P1-201ENST00000440184 427 ntBASIC4.89□□□□□ -1.63
USP41Q3LFD5 AC064871.1-201ENST00000444562 427 ntTSL 3 BASIC4.89□□□□□ -1.63
USP41Q3LFD5 LINC00440-201ENST00000446579 734 ntTSL 5 BASIC4.89□□□□□ -1.63
USP41Q3LFD5 AL355592.1-201ENST00000450292 386 ntTSL 2 BASIC4.89□□□□□ -1.63
USP41Q3LFD5 GJE1-201ENST00000450456 916 ntAPPRIS P1 TSL 5 BASIC4.89□□□□□ -1.63
USP41Q3LFD5 AC104164.3-201ENST00000467363 1258 ntBASIC4.89□□□□□ -1.63
USP41Q3LFD5 AC108751.2-201ENST00000469993 231 ntBASIC4.89□□□□□ -1.63
USP41Q3LFD5 LINC02027-201ENST00000482617 596 ntTSL 5 BASIC4.89□□□□□ -1.63
USP41Q3LFD5 DWORF-201ENST00000489090 873 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
USP41Q3LFD5 LINC02466-202ENST00000509105 653 ntTSL 3 BASIC4.89□□□□□ -1.63
USP41Q3LFD5 TCP11X3P-202ENST00000514289 1254 ntBASIC4.89□□□□□ -1.63
USP41Q3LFD5 IGLVIV-65-201ENST00000517313 360 ntBASIC4.89□□□□□ -1.63
USP41Q3LFD5 AC016885.1-201ENST00000517796 532 ntTSL 4 BASIC4.89□□□□□ -1.63
USP41Q3LFD5 AP003400.1-201ENST00000528319 231 ntTSL 5 BASIC4.89□□□□□ -1.63
USP41Q3LFD5 PTH-202ENST00000529816 799 ntAPPRIS P1 TSL 5 BASIC4.89□□□□□ -1.63
USP41Q3LFD5 MFAP5-205ENST00000535336 566 ntTSL 4 BASIC4.89□□□□□ -1.63
USP41Q3LFD5 PDZD9-203ENST00000537222 1068 ntTSL 3 BASIC4.89□□□□□ -1.63
USP41Q3LFD5 AL132780.1-201ENST00000548819 556 ntTSL 4 BASIC4.89□□□□□ -1.63
USP41Q3LFD5 AL121594.4-201ENST00000556211 1196 ntBASIC4.89□□□□□ -1.63
USP41Q3LFD5 AC087477.6-201ENST00000559595 843 ntBASIC4.89□□□□□ -1.63
USP41Q3LFD5 AC114546.1-201ENST00000560140 473 ntTSL 3 BASIC4.89□□□□□ -1.63
USP41Q3LFD5 AC087286.1-201ENST00000560712 568 ntTSL 3 BASIC4.89□□□□□ -1.63
USP41Q3LFD5 AC021351.1-201ENST00000560886 652 ntTSL 5 BASIC4.89□□□□□ -1.63
USP41Q3LFD5 LINC02185-201ENST00000575424 760 ntTSL 5 BASIC4.89□□□□□ -1.63
USP41Q3LFD5 CYCSP40-201ENST00000575927 294 ntBASIC4.89□□□□□ -1.63
USP41Q3LFD5 AC068408.2-201ENST00000584566 439 ntTSL 3 BASIC4.89□□□□□ -1.63
USP41Q3LFD5 IMMP1LP1-201ENST00000605170 488 ntBASIC4.89□□□□□ -1.63
USP41Q3LFD5 AC091046.2-201ENST00000620775 665 ntBASIC4.89□□□□□ -1.63
USP41Q3LFD5 AL445487.1-201ENST00000415694 1580 ntBASIC4.89□□□□□ -1.63
USP41Q3LFD5 ATF7IP-209ENST00000536444 8774 ntAPPRIS ALT2 TSL 1 (best) BASIC4.89□□□□□ -1.63
USP41Q3LFD5 EPHA7-202ENST00000369303 6588 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
USP41Q3LFD5 PARP8-201ENST00000281631 7177 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
USP41Q3LFD5 PCDH9-201ENST00000377861 28227 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
USP41Q3LFD5 CCSER2-210ENST00000543283 5888 ntTSL 2 BASIC4.89□□□□□ -1.63
USP41Q3LFD5 LINC01085-201ENST00000502759 1984 ntTSL 2 BASIC4.89□□□□□ -1.63
USP41Q3LFD5 MYO9A-209ENST00000564571 8111 ntAPPRIS ALT2 TSL 1 (best) BASIC4.89□□□□□ -1.63
USP41Q3LFD5 SALL4P2-201ENST00000423288 2910 ntBASIC4.89□□□□□ -1.63
USP41Q3LFD5 SNCA-AS1-201ENST00000501215 2646 ntTSL 2 BASIC4.89□□□□□ -1.63
USP41Q3LFD5 AC135352.1-201ENST00000506173 1418 ntBASIC4.89□□□□□ -1.63
USP41Q3LFD5 OR10Z1-202ENST00000641002 6323 ntAPPRIS P1 BASIC4.88□□□□□ -1.63
USP41Q3LFD5 ST7-212ENST00000422922 1887 ntTSL 5 BASIC4.88□□□□□ -1.63
USP41Q3LFD5 ERGIC2-212ENST00000611644 4961 ntTSL 5 BASIC4.88□□□□□ -1.63
USP41Q3LFD5 NECAB1-202ENST00000521366 2908 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
USP41Q3LFD5 BCLAF1P2-201ENST00000624956 2609 ntBASIC4.88□□□□□ -1.63
USP41Q3LFD5 RPL26-201ENST00000293842 524 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
USP41Q3LFD5 METTL21EP-201ENST00000298105 713 ntBASIC4.88□□□□□ -1.63
USP41Q3LFD5 SNORA62.2-201ENST00000364672 152 ntBASIC4.88□□□□□ -1.63
USP41Q3LFD5 MLIP-203ENST00000370877 1234 ntAPPRIS ALT2 TSL 5 BASIC4.88□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 90 ms