Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 AC117462.1-201ENST00000461186 554 ntTSL 4 BASIC6□□□□□ -1.45
COL8A1P27658 TNFAIP8-205ENST00000504642 711 ntTSL 3 BASIC6□□□□□ -1.45
COL8A1P27658 AC104304.1-201ENST00000505797 291 ntAPPRIS P1 TSL 3 BASIC6□□□□□ -1.45
COL8A1P27658 AC008638.1-201ENST00000506035 866 ntBASIC6□□□□□ -1.45
COL8A1P27658 MTND1P19-201ENST00000511780 315 ntBASIC6□□□□□ -1.45
COL8A1P27658 PGAM4P2-201ENST00000512491 721 ntBASIC6□□□□□ -1.45
COL8A1P27658 AP001961.1-201ENST00000515782 526 ntTSL 3 BASIC6□□□□□ -1.45
COL8A1P27658 AC018682.2-201ENST00000517716 399 ntTSL 5 BASIC6□□□□□ -1.45
COL8A1P27658 AC008126.1-201ENST00000549019 480 ntBASIC6□□□□□ -1.45
COL8A1P27658 AC093519.1-201ENST00000566109 298 ntBASIC6□□□□□ -1.45
COL8A1P27658 MIR3133-201ENST00000583157 78 ntBASIC6□□□□□ -1.45
COL8A1P27658 AC015801.1-201ENST00000585651 153 ntBASIC6□□□□□ -1.45
COL8A1P27658 AL513327.3-201ENST00000602618 469 ntBASIC6□□□□□ -1.45
COL8A1P27658 RNF138P2-201ENST00000603490 592 ntBASIC6□□□□□ -1.45
COL8A1P27658 AL355297.3-201ENST00000604082 446 ntBASIC6□□□□□ -1.45
COL8A1P27658 AL591167.1-201ENST00000607321 456 ntBASIC6□□□□□ -1.45
COL8A1P27658 TSPAN6-205ENST00000614008 900 ntTSL 5 BASIC6□□□□□ -1.45
COL8A1P27658 LINC00836-201ENST00000625325 582 ntTSL 4 BASIC6□□□□□ -1.45
COL8A1P27658 AC073488.2-201ENST00000631903 751 ntBASIC6□□□□□ -1.45
COL8A1P27658 NCALD-201ENST00000220931 3283 ntAPPRIS P1 TSL 1 (best) BASIC6□□□□□ -1.45
COL8A1P27658 USP37-201ENST00000258399 8032 ntAPPRIS P1 TSL 1 (best) BASIC6□□□□□ -1.45
COL8A1P27658 CD96-201ENST00000283285 4324 ntAPPRIS P4 TSL 1 (best) BASIC6□□□□□ -1.45
COL8A1P27658 NIT2-201ENST00000394140 7289 ntAPPRIS P1 TSL 1 (best) BASIC6□□□□□ -1.45
COL8A1P27658 SETDB1-201ENST00000271640 4437 ntAPPRIS ALT1 TSL 1 (best) BASIC6□□□□□ -1.45
COL8A1P27658 AC121761.1-201ENST00000547326 1482 ntTSL 3 BASIC6□□□□□ -1.45
COL8A1P27658 ZC3H11A-202ENST00000367210 5877 ntAPPRIS P1 TSL 1 (best) BASIC6□□□□□ -1.45
COL8A1P27658 ANKRD36BP1-201ENST00000358576 1779 ntBASIC6□□□□□ -1.45
COL8A1P27658 KIF20A-201ENST00000394894 3201 ntAPPRIS P1 TSL 1 (best) BASIC6□□□□□ -1.45
COL8A1P27658 BRWD3-201ENST00000373275 11381 ntAPPRIS P1 TSL 1 (best) BASIC6□□□□□ -1.45
COL8A1P27658 LINC02347-201ENST00000397346 2458 ntTSL 1 (best) BASIC6□□□□□ -1.45
COL8A1P27658 SUPT7L-202ENST00000404798 4114 ntTSL 2 BASIC6□□□□□ -1.45
COL8A1P27658 AC008040.1-202ENST00000483289 6251 ntTSL 1 (best) BASIC6□□□□□ -1.45
COL8A1P27658 AC009812.3-201ENST00000523871 3766 ntTSL 4 BASIC6□□□□□ -1.45
COL8A1P27658 EPS8-207ENST00000540613 2204 ntTSL 2 BASIC5.99□□□□□ -1.45
COL8A1P27658 ZNF585B-205ENST00000532828 6210 ntAPPRIS P1 TSL 1 (best) BASIC5.99□□□□□ -1.45
COL8A1P27658 IL1RAP-201ENST00000072516 4697 ntAPPRIS P1 TSL 1 (best) BASIC5.99□□□□□ -1.45
COL8A1P27658 UTP6-201ENST00000261708 4392 ntAPPRIS P1 TSL 1 (best) BASIC5.99□□□□□ -1.45
COL8A1P27658 OPALIN-202ENST00000393870 3578 ntTSL 3 BASIC5.99□□□□□ -1.45
COL8A1P27658 SIRPG-AS1-202ENST00000456177 2795 ntTSL 2 BASIC5.99□□□□□ -1.45
COL8A1P27658 IFT74-204ENST00000443698 2163 ntAPPRIS P1 TSL 5 BASIC5.99□□□□□ -1.45
COL8A1P27658 TMEM71-202ENST00000377901 1861 ntAPPRIS ALT2 TSL 1 (best) BASIC5.99□□□□□ -1.45
COL8A1P27658 SERPINI2-201ENST00000264677 1678 ntAPPRIS P1 TSL 1 (best) BASIC5.99□□□□□ -1.45
COL8A1P27658 CD96-203ENST00000438817 1565 ntTSL 1 (best) BASIC5.99□□□□□ -1.45
COL8A1P27658 SOBP-204ENST00000618129 1550 ntTSL 1 (best) BASIC5.99□□□□□ -1.45
COL8A1P27658 MUM1L1-201ENST00000337685 4308 ntAPPRIS P1 TSL 3 BASIC5.99□□□□□ -1.45
COL8A1P27658 ELSPBP1-201ENST00000339841 1052 ntAPPRIS P2 TSL 1 (best) BASIC5.99□□□□□ -1.45
COL8A1P27658 RNU4-1-201ENST00000363925 141 ntBASIC5.99□□□□□ -1.45
COL8A1P27658 RNU4-66P-201ENST00000365199 138 ntBASIC5.99□□□□□ -1.45
COL8A1P27658 LCN1P2-201ENST00000372030 223 ntBASIC5.99□□□□□ -1.45
COL8A1P27658 CASP10-206ENST00000374650 1126 ntTSL 1 (best) BASIC5.99□□□□□ -1.45
COL8A1P27658 AC117402.1-202ENST00000383686 820 ntTSL 2 BASIC5.99□□□□□ -1.45
COL8A1P27658 RNU6-38P-201ENST00000384085 107 ntBASIC5.99□□□□□ -1.45
COL8A1P27658 RNU6-713P-201ENST00000384761 107 ntBASIC5.99□□□□□ -1.45
COL8A1P27658 AC112721.2-201ENST00000409910 541 ntTSL 4 BASIC5.99□□□□□ -1.45
COL8A1P27658 RPL7P4-203ENST00000430239 730 ntBASIC5.99□□□□□ -1.45
COL8A1P27658 AL132765.1-201ENST00000434165 553 ntBASIC5.99□□□□□ -1.45
COL8A1P27658 LINC01891-201ENST00000439798 538 ntTSL 4 BASIC5.99□□□□□ -1.45
COL8A1P27658 COL11A2P1-205ENST00000441798 676 ntBASIC5.99□□□□□ -1.45
COL8A1P27658 TRAPPC2P3-201ENST00000443200 321 ntBASIC5.99□□□□□ -1.45
COL8A1P27658 GAPDHP20-201ENST00000444107 1007 ntBASIC5.99□□□□□ -1.45
COL8A1P27658 OSTCP8-201ENST00000445117 448 ntBASIC5.99□□□□□ -1.45
COL8A1P27658 OR1H1P-201ENST00000448731 937 ntBASIC5.99□□□□□ -1.45
COL8A1P27658 RNU6-333P-201ENST00000459117 107 ntBASIC5.99□□□□□ -1.45
COL8A1P27658 AC093627.1-201ENST00000465755 877 ntTSL 3 BASIC5.99□□□□□ -1.45
COL8A1P27658 MBNL1-213ENST00000465907 945 ntTSL 1 (best) BASIC5.99□□□□□ -1.45
COL8A1P27658 RN7SL160P-201ENST00000468558 284 ntBASIC5.99□□□□□ -1.45
COL8A1P27658 RN7SL216P-201ENST00000471607 298 ntBASIC5.99□□□□□ -1.45
COL8A1P27658 UBFD1P1-201ENST00000473259 814 ntBASIC5.99□□□□□ -1.45
COL8A1P27658 RPS4XP18-201ENST00000495480 763 ntBASIC5.99□□□□□ -1.45
COL8A1P27658 RPS27P27-201ENST00000498779 255 ntBASIC5.99□□□□□ -1.45
COL8A1P27658 AC094108.1-201ENST00000502494 527 ntTSL 3 BASIC5.99□□□□□ -1.45
COL8A1P27658 AC137770.1-201ENST00000504620 530 ntTSL 3 BASIC5.99□□□□□ -1.45
COL8A1P27658 SNORA74.1-201ENST00000516320 180 ntBASIC5.99□□□□□ -1.45
COL8A1P27658 Y_RNA.703-201ENST00000516846 111 ntBASIC5.99□□□□□ -1.45
COL8A1P27658 SUMO2P20-201ENST00000520803 283 ntBASIC5.99□□□□□ -1.45
COL8A1P27658 AP005435.4-201ENST00000529514 284 ntBASIC5.99□□□□□ -1.45
COL8A1P27658 AC002056.2-201ENST00000532913 284 ntTSL 5 BASIC5.99□□□□□ -1.45
COL8A1P27658 CACNA1C-IT2-201ENST00000541871 589 ntTSL 2 BASIC5.99□□□□□ -1.45
COL8A1P27658 AP003174.2-201ENST00000544663 294 ntTSL 3 BASIC5.99□□□□□ -1.45
COL8A1P27658 DAZAP2-209ENST00000549732 601 ntTSL 2 BASIC5.99□□□□□ -1.45
COL8A1P27658 AC129492.2-201ENST00000577807 517 ntTSL 3 BASIC5.99□□□□□ -1.45
COL8A1P27658 AC044873.1-201ENST00000580487 399 ntTSL 3 BASIC5.99□□□□□ -1.45
COL8A1P27658 AL136084.2-213ENST00000585704 690 ntTSL 5 BASIC5.99□□□□□ -1.45
COL8A1P27658 AL136084.2-212ENST00000589976 654 ntTSL 5 BASIC5.99□□□□□ -1.45
COL8A1P27658 AC243773.3-201ENST00000613270 256 ntBASIC5.99□□□□□ -1.45
COL8A1P27658 AC025162.2-201ENST00000619602 560 ntBASIC5.99□□□□□ -1.45
COL8A1P27658 AP005212.3-201ENST00000619964 528 ntBASIC5.99□□□□□ -1.45
COL8A1P27658 SLC14A2-203ENST00000586448 3540 ntAPPRIS P1 TSL 2 BASIC5.99□□□□□ -1.45
COL8A1P27658 DYNC2LI1-203ENST00000398823 2903 ntTSL 1 (best) BASIC5.99□□□□□ -1.45
COL8A1P27658 CD163-201ENST00000359156 4268 ntAPPRIS P3 TSL 1 (best) BASIC5.99□□□□□ -1.45
COL8A1P27658 SGMS2-203ENST00000394686 2127 ntAPPRIS P1 TSL 1 (best) BASIC5.99□□□□□ -1.45
COL8A1P27658 MAP9-208ENST00000515654 2044 ntTSL 5 BASIC5.99□□□□□ -1.45
COL8A1P27658 CD160-205ENST00000616463 3388 ntAPPRIS ALT2 TSL 2 BASIC5.99□□□□□ -1.45
COL8A1P27658 MUC5AC-201ENST00000621226 17448 ntAPPRIS P1 TSL 5 BASIC5.99□□□□□ -1.45
COL8A1P27658 AL731566.1-201ENST00000620490 1937 ntBASIC5.99□□□□□ -1.45
COL8A1P27658 CPEB2-AS1-202ENST00000501916 1806 ntTSL 2 BASIC5.99□□□□□ -1.45
COL8A1P27658 TRIQK-212ENST00000520686 1808 ntAPPRIS P1 TSL 1 (best) BASIC5.99□□□□□ -1.45
COL8A1P27658 NCOA2-201ENST00000452400 8447 ntAPPRIS P1 TSL 1 (best) BASIC5.99□□□□□ -1.45
COL8A1P27658 MAK-202ENST00000354489 3941 ntTSL 5 BASIC5.99□□□□□ -1.45
COL8A1P27658 ASCC1-201ENST00000317126 1501 ntAPPRIS P1 TSL 2 BASIC5.99□□□□□ -1.45
Retrieved 100 of 98,524 protein–RNA pairs in 87.6 ms