Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 SPRR2E-202ENST00000368751 692 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
LMX1BO60663 CCNB3-203ENST00000376038 1201 ntTSL 5 BASIC4.24□□□□□ -1.73
LMX1BO60663 RNU6-224P-201ENST00000384055 107 ntBASIC4.24□□□□□ -1.73
LMX1BO60663 RNU6-83P-201ENST00000384568 112 ntBASIC4.24□□□□□ -1.73
LMX1BO60663 IGLJ6-201ENST00000390328 70 ntAPPRIS P1 BASIC4.24□□□□□ -1.73
LMX1BO60663 AL356967.1-201ENST00000406305 431 ntBASIC4.24□□□□□ -1.73
LMX1BO60663 HMGB3P31-201ENST00000413333 595 ntBASIC4.24□□□□□ -1.73
LMX1BO60663 AC019050.1-201ENST00000418508 492 ntBASIC4.24□□□□□ -1.73
LMX1BO60663 AL078590.2-202ENST00000422736 568 ntTSL 3 BASIC4.24□□□□□ -1.73
LMX1BO60663 RPP40P1-201ENST00000426762 456 ntBASIC4.24□□□□□ -1.73
LMX1BO60663 AL365396.1-201ENST00000430854 671 ntBASIC4.24□□□□□ -1.73
LMX1BO60663 LINC01745-201ENST00000430921 372 ntTSL 5 BASIC4.24□□□□□ -1.73
LMX1BO60663 AC092162.1-201ENST00000432828 434 ntBASIC4.24□□□□□ -1.73
LMX1BO60663 AL590867.3-201ENST00000436953 438 ntTSL 3 BASIC4.24□□□□□ -1.73
LMX1BO60663 AC084149.1-201ENST00000437233 284 ntTSL 5 BASIC4.24□□□□□ -1.73
LMX1BO60663 AL445567.1-201ENST00000439121 144 ntBASIC4.24□□□□□ -1.73
LMX1BO60663 AC004824.1-201ENST00000439577 311 ntTSL 5 BASIC4.24□□□□□ -1.73
LMX1BO60663 AC099342.1-201ENST00000446399 1124 ntTSL 3 BASIC4.24□□□□□ -1.73
LMX1BO60663 AL138767.2-201ENST00000446794 168 ntTSL 3 BASIC4.24□□□□□ -1.73
LMX1BO60663 PTENP1-201ENST00000447117 1215 ntBASIC4.24□□□□□ -1.73
LMX1BO60663 AL050341.1-201ENST00000447743 313 ntBASIC4.24□□□□□ -1.73
LMX1BO60663 MTND6P5-201ENST00000448266 512 ntBASIC4.24□□□□□ -1.73
LMX1BO60663 LINC01828-202ENST00000450294 955 ntTSL 5 BASIC4.24□□□□□ -1.73
LMX1BO60663 IMMP2L-205ENST00000450877 761 ntTSL 2 BASIC4.24□□□□□ -1.73
LMX1BO60663 PCBP1-AS1-237ENST00000452431 1194 ntTSL 4 BASIC4.24□□□□□ -1.73
LMX1BO60663 AC073387.1-201ENST00000453261 709 ntBASIC4.24□□□□□ -1.73
LMX1BO60663 LINC01921-201ENST00000456163 393 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
LMX1BO60663 ATG12P2-201ENST00000456830 416 ntBASIC4.24□□□□□ -1.73
LMX1BO60663 AC117513.1-201ENST00000462792 766 ntTSL 2 BASIC4.24□□□□□ -1.73
LMX1BO60663 AC063943.1-201ENST00000465434 453 ntBASIC4.24□□□□□ -1.73
LMX1BO60663 ENSA-211ENST00000503345 793 ntTSL 3 BASIC4.24□□□□□ -1.73
LMX1BO60663 BACH1-IT1-201ENST00000504298 821 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
LMX1BO60663 HPRT1P2-201ENST00000505250 544 ntBASIC4.24□□□□□ -1.73
LMX1BO60663 AC138938.1-201ENST00000515431 782 ntBASIC4.24□□□□□ -1.73
LMX1BO60663 AC087855.1-201ENST00000518178 430 ntTSL 3 BASIC4.24□□□□□ -1.73
LMX1BO60663 AP003557.1-202ENST00000528978 562 ntTSL 4 BASIC4.24□□□□□ -1.73
LMX1BO60663 AP003557.1-201ENST00000531715 585 ntTSL 3 BASIC4.24□□□□□ -1.73
LMX1BO60663 NRG3-205ENST00000537893 1174 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
LMX1BO60663 GCSHP4-201ENST00000538792 439 ntBASIC4.24□□□□□ -1.73
LMX1BO60663 AC006518.2-201ENST00000542513 940 ntBASIC4.24□□□□□ -1.73
LMX1BO60663 REXO2-218ENST00000544827 880 ntTSL 3 BASIC4.24□□□□□ -1.73
LMX1BO60663 AC020612.3-201ENST00000550644 570 ntTSL 2 BASIC4.24□□□□□ -1.73
LMX1BO60663 AC011611.5-201ENST00000552477 578 ntBASIC4.24□□□□□ -1.73
LMX1BO60663 PSMA4-206ENST00000558341 719 ntTSL 5 BASIC4.24□□□□□ -1.73
LMX1BO60663 LINC02170-201ENST00000561519 555 ntTSL 4 BASIC4.24□□□□□ -1.73
LMX1BO60663 AC016134.1-201ENST00000565259 701 ntTSL 3 BASIC4.24□□□□□ -1.73
LMX1BO60663 AL031716.1-201ENST00000569106 530 ntTSL 5 BASIC4.24□□□□□ -1.73
LMX1BO60663 AC100872.1-201ENST00000577765 501 ntTSL 5 BASIC4.24□□□□□ -1.73
LMX1BO60663 FAM106CP-201ENST00000582212 507 ntBASIC4.24□□□□□ -1.73
LMX1BO60663 AC006272.2-201ENST00000594725 163 ntBASIC4.24□□□□□ -1.73
LMX1BO60663 AC008745.1-201ENST00000604064 271 ntBASIC4.24□□□□□ -1.73
LMX1BO60663 AL159169.2-201ENST00000610061 1269 ntBASIC4.24□□□□□ -1.73
LMX1BO60663 KLRF1-207ENST00000617793 1096 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
LMX1BO60663 AC019206.1-201ENST00000621938 425 ntBASIC4.24□□□□□ -1.73
LMX1BO60663 AL139220.2-223ENST00000625982 921 ntTSL 5 BASIC4.24□□□□□ -1.73
LMX1BO60663 CD44-239ENST00000639002 528 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
LMX1BO60663 HERC4-205ENST00000412272 4211 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
LMX1BO60663 R3HDM1-201ENST00000264160 4648 ntAPPRIS P3 TSL 1 (best) BASIC4.24□□□□□ -1.73
LMX1BO60663 GABRA1-220ENST00000638159 4088 ntTSL 5 BASIC4.24□□□□□ -1.73
LMX1BO60663 SAMMSON-213ENST00000641336 1521 ntBASIC4.24□□□□□ -1.73
LMX1BO60663 OSBPL11-201ENST00000296220 4191 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
LMX1BO60663 TEX11-201ENST00000344304 2977 ntAPPRIS P3 TSL 5 BASIC4.24□□□□□ -1.73
LMX1BO60663 MAPK10-208ENST00000395169 4049 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
LMX1BO60663 KIF3A-203ENST00000403231 2181 ntTSL 2 BASIC4.24□□□□□ -1.73
LMX1BO60663 C6-202ENST00000337836 3551 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
LMX1BO60663 PIK3CB-214ENST00000544716 3181 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
LMX1BO60663 ATF7IP-209ENST00000536444 8774 ntAPPRIS ALT2 TSL 1 (best) BASIC4.24□□□□□ -1.73
LMX1BO60663 AC011912.1-201ENST00000623483 5819 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
LMX1BO60663 SAMD12-202ENST00000409003 8866 ntAPPRIS P1 TSL 5 BASIC4.24□□□□□ -1.73
LMX1BO60663 B3GNT5-201ENST00000326505 4123 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
LMX1BO60663 GTDC1-203ENST00000392867 2408 ntTSL 5 BASIC4.23□□□□□ -1.73
LMX1BO60663 AL133268.1-201ENST00000405676 1401 ntBASIC4.23□□□□□ -1.73
LMX1BO60663 LINC01689-201ENST00000416218 2007 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
LMX1BO60663 SLC4A10-206ENST00000446997 5551 ntAPPRIS P4 TSL 1 (best) BASIC4.23□□□□□ -1.73
LMX1BO60663 AC011503.2-201ENST00000594230 1500 ntBASIC4.23□□□□□ -1.73
LMX1BO60663 CCDC169-201ENST00000239859 708 ntAPPRIS P1 TSL 5 BASIC4.23□□□□□ -1.73
LMX1BO60663 VNN2-201ENST00000326499 2118 ntAPPRIS P4 TSL 1 (best) BASIC4.23□□□□□ -1.73
LMX1BO60663 ANKRD36P1-201ENST00000344424 659 ntBASIC4.23□□□□□ -1.73
LMX1BO60663 KLRF1-202ENST00000354855 838 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
LMX1BO60663 AF130351.1-202ENST00000400562 808 ntAPPRIS P5 TSL 3 BASIC4.23□□□□□ -1.73
LMX1BO60663 AL035604.1-201ENST00000416481 531 ntTSL 3 BASIC4.23□□□□□ -1.73
LMX1BO60663 AC004415.1-201ENST00000422697 449 ntTSL 3 BASIC4.23□□□□□ -1.73
LMX1BO60663 C6orf52-203ENST00000426700 493 ntAPPRIS P2 TSL 2 BASIC4.23□□□□□ -1.73
LMX1BO60663 AC068287.1-201ENST00000430283 295 ntBASIC4.23□□□□□ -1.73
LMX1BO60663 AL035458.1-201ENST00000433096 585 ntBASIC4.23□□□□□ -1.73
LMX1BO60663 USP9YP28-201ENST00000435142 589 ntBASIC4.23□□□□□ -1.73
LMX1BO60663 AL008629.1-201ENST00000438615 184 ntBASIC4.23□□□□□ -1.73
LMX1BO60663 AC012445.1-201ENST00000442831 607 ntTSL 3 BASIC4.23□□□□□ -1.73
LMX1BO60663 OR7E125P-201ENST00000443450 846 ntBASIC4.23□□□□□ -1.73
LMX1BO60663 TDGF1P1-201ENST00000445734 527 ntBASIC4.23□□□□□ -1.73
LMX1BO60663 AC068135.1-201ENST00000446164 246 ntBASIC4.23□□□□□ -1.73
LMX1BO60663 EXTL2P1-201ENST00000446218 416 ntBASIC4.23□□□□□ -1.73
LMX1BO60663 AC073264.2-201ENST00000448886 166 ntBASIC4.23□□□□□ -1.73
LMX1BO60663 LINC01813-201ENST00000451034 712 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
LMX1BO60663 AL359715.2-201ENST00000452402 682 ntTSL 2 BASIC4.23□□□□□ -1.73
LMX1BO60663 KIAA0895-209ENST00000453212 956 ntTSL 3 BASIC4.23□□□□□ -1.73
LMX1BO60663 AL035409.1-201ENST00000454305 497 ntTSL 2 BASIC4.23□□□□□ -1.73
LMX1BO60663 PTCHD1-AS-201ENST00000455399 718 ntTSL 3 BASIC4.23□□□□□ -1.73
LMX1BO60663 RN7SL517P-201ENST00000462240 305 ntBASIC4.23□□□□□ -1.73
LMX1BO60663 RN7SL354P-201ENST00000469282 294 ntBASIC4.23□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 76.7 ms