Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 BET1L-202ENST00000332865 533 ntTSL 5 BASIC20.22■□□□□ 0.83
LIMD1Q9UGP4 GUCA2B-201ENST00000372581 597 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
LIMD1Q9UGP4 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
LIMD1Q9UGP4 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC20.22■□□□□ 0.83
LIMD1Q9UGP4 CLEC4GP1-201ENST00000596555 870 ntBASIC20.22■□□□□ 0.83
LIMD1Q9UGP4 NDUFV2-AS1-203ENST00000608008 779 ntBASIC20.22■□□□□ 0.83
LIMD1Q9UGP4 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
LIMD1Q9UGP4 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC20.22■□□□□ 0.83
LIMD1Q9UGP4 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC20.22■□□□□ 0.83
LIMD1Q9UGP4 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
LIMD1Q9UGP4 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
LIMD1Q9UGP4 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
LIMD1Q9UGP4 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
LIMD1Q9UGP4 AC005332.1-201ENST00000577698 1310 ntBASIC20.22■□□□□ 0.83
LIMD1Q9UGP4 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
LIMD1Q9UGP4 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC20.22■□□□□ 0.83
LIMD1Q9UGP4 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC20.21■□□□□ 0.83
LIMD1Q9UGP4 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
LIMD1Q9UGP4 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
LIMD1Q9UGP4 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC20.21■□□□□ 0.83
LIMD1Q9UGP4 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
LIMD1Q9UGP4 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
LIMD1Q9UGP4 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC20.21■□□□□ 0.83
LIMD1Q9UGP4 TMEM218-206ENST00000527766 812 ntAPPRIS P1 TSL 3 BASIC20.21■□□□□ 0.83
LIMD1Q9UGP4 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC20.21■□□□□ 0.83
LIMD1Q9UGP4 AL441883.1-201ENST00000566170 1045 ntBASIC20.21■□□□□ 0.83
LIMD1Q9UGP4 AL353719.1-201ENST00000566847 864 ntBASIC20.21■□□□□ 0.83
LIMD1Q9UGP4 AL512604.3-201ENST00000569583 964 ntBASIC20.21■□□□□ 0.83
LIMD1Q9UGP4 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC20.21■□□□□ 0.83
LIMD1Q9UGP4 AC116407.4-201ENST00000623319 1061 ntBASIC20.21■□□□□ 0.83
LIMD1Q9UGP4 AL023973.1-201ENST00000624619 620 ntBASIC20.21■□□□□ 0.83
LIMD1Q9UGP4 CLN6-214ENST00000636314 442 ntTSL 3 BASIC20.21■□□□□ 0.83
LIMD1Q9UGP4 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
LIMD1Q9UGP4 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC20.21■□□□□ 0.83
LIMD1Q9UGP4 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
LIMD1Q9UGP4 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
LIMD1Q9UGP4 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
LIMD1Q9UGP4 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC20.21■□□□□ 0.83
LIMD1Q9UGP4 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
LIMD1Q9UGP4 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
LIMD1Q9UGP4 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
LIMD1Q9UGP4 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC20.2■□□□□ 0.82
LIMD1Q9UGP4 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
LIMD1Q9UGP4 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
LIMD1Q9UGP4 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC20.2■□□□□ 0.82
LIMD1Q9UGP4 GXYLT1P6-201ENST00000456472 1187 ntBASIC20.2■□□□□ 0.82
LIMD1Q9UGP4 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC20.2■□□□□ 0.82
LIMD1Q9UGP4 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC20.2■□□□□ 0.82
LIMD1Q9UGP4 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
LIMD1Q9UGP4 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC20.2■□□□□ 0.82
LIMD1Q9UGP4 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
LIMD1Q9UGP4 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
LIMD1Q9UGP4 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
LIMD1Q9UGP4 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC20.19■□□□□ 0.82
LIMD1Q9UGP4 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
LIMD1Q9UGP4 PLK5-205ENST00000642079 1969 ntBASIC20.19■□□□□ 0.82
LIMD1Q9UGP4 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
LIMD1Q9UGP4 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC20.19■□□□□ 0.82
LIMD1Q9UGP4 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC20.19■□□□□ 0.82
LIMD1Q9UGP4 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC20.19■□□□□ 0.82
LIMD1Q9UGP4 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
LIMD1Q9UGP4 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
LIMD1Q9UGP4 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC20.19■□□□□ 0.82
LIMD1Q9UGP4 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC20.19■□□□□ 0.82
LIMD1Q9UGP4 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC20.19■□□□□ 0.82
LIMD1Q9UGP4 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
LIMD1Q9UGP4 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
LIMD1Q9UGP4 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
LIMD1Q9UGP4 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC20.19■□□□□ 0.82
LIMD1Q9UGP4 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
LIMD1Q9UGP4 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
LIMD1Q9UGP4 ZNF510-203ENST00000375231 5616 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
LIMD1Q9UGP4 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
LIMD1Q9UGP4 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
LIMD1Q9UGP4 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
LIMD1Q9UGP4 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
LIMD1Q9UGP4 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC20.18■□□□□ 0.82
LIMD1Q9UGP4 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
LIMD1Q9UGP4 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
LIMD1Q9UGP4 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
LIMD1Q9UGP4 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC20.18■□□□□ 0.82
LIMD1Q9UGP4 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC20.18■□□□□ 0.82
LIMD1Q9UGP4 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC20.18■□□□□ 0.82
LIMD1Q9UGP4 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
LIMD1Q9UGP4 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
LIMD1Q9UGP4 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
LIMD1Q9UGP4 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC20.18■□□□□ 0.82
LIMD1Q9UGP4 PRSS44-201ENST00000515154 1146 ntBASIC20.18■□□□□ 0.82
LIMD1Q9UGP4 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC20.18■□□□□ 0.82
LIMD1Q9UGP4 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC20.18■□□□□ 0.82
LIMD1Q9UGP4 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
LIMD1Q9UGP4 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
LIMD1Q9UGP4 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC20.18■□□□□ 0.82
LIMD1Q9UGP4 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC20.18■□□□□ 0.82
LIMD1Q9UGP4 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC20.18■□□□□ 0.82
LIMD1Q9UGP4 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
LIMD1Q9UGP4 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC20.18■□□□□ 0.82
LIMD1Q9UGP4 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
LIMD1Q9UGP4 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
LIMD1Q9UGP4 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 53.6 ms