Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
LHX3Q9UBR4 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC19.57■□□□□ 0.72
LHX3Q9UBR4 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC19.57■□□□□ 0.72
LHX3Q9UBR4 AC008040.2-201ENST00000461049 708 ntBASIC19.57■□□□□ 0.72
LHX3Q9UBR4 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC19.57■□□□□ 0.72
LHX3Q9UBR4 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC19.57■□□□□ 0.72
LHX3Q9UBR4 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC19.57■□□□□ 0.72
LHX3Q9UBR4 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC19.57■□□□□ 0.72
LHX3Q9UBR4 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC19.57■□□□□ 0.72
LHX3Q9UBR4 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC19.57■□□□□ 0.72
LHX3Q9UBR4 SDHAP1-207ENST00000440850 2000 ntBASIC19.57■□□□□ 0.72
LHX3Q9UBR4 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC19.57■□□□□ 0.72
LHX3Q9UBR4 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
LHX3Q9UBR4 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC19.57■□□□□ 0.72
LHX3Q9UBR4 TP73-202ENST00000354437 2140 ntTSL 5 BASIC19.57■□□□□ 0.72
LHX3Q9UBR4 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
LHX3Q9UBR4 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC19.57■□□□□ 0.72
LHX3Q9UBR4 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC19.57■□□□□ 0.72
LHX3Q9UBR4 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC19.57■□□□□ 0.72
LHX3Q9UBR4 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
LHX3Q9UBR4 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC19.56■□□□□ 0.72
LHX3Q9UBR4 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
LHX3Q9UBR4 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
LHX3Q9UBR4 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC19.56■□□□□ 0.72
LHX3Q9UBR4 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC19.56■□□□□ 0.72
LHX3Q9UBR4 FSCN1P1-201ENST00000568912 1481 ntBASIC19.56■□□□□ 0.72
LHX3Q9UBR4 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC19.56■□□□□ 0.72
LHX3Q9UBR4 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC19.56■□□□□ 0.72
LHX3Q9UBR4 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC19.56■□□□□ 0.72
LHX3Q9UBR4 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC19.56■□□□□ 0.72
LHX3Q9UBR4 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC19.56■□□□□ 0.72
LHX3Q9UBR4 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
LHX3Q9UBR4 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC19.56■□□□□ 0.72
LHX3Q9UBR4 PLA2G15-202ENST00000413021 1346 ntTSL 2 BASIC19.55■□□□□ 0.72
LHX3Q9UBR4 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC19.55■□□□□ 0.72
LHX3Q9UBR4 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
LHX3Q9UBR4 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC19.55■□□□□ 0.72
LHX3Q9UBR4 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
LHX3Q9UBR4 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC19.55■□□□□ 0.72
LHX3Q9UBR4 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
LHX3Q9UBR4 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
LHX3Q9UBR4 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
LHX3Q9UBR4 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC19.55■□□□□ 0.72
LHX3Q9UBR4 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC19.55■□□□□ 0.72
LHX3Q9UBR4 AC004951.3-201ENST00000418645 1148 ntBASIC19.55■□□□□ 0.72
LHX3Q9UBR4 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC19.55■□□□□ 0.72
LHX3Q9UBR4 RBM17P1-201ENST00000453646 1190 ntBASIC19.55■□□□□ 0.72
LHX3Q9UBR4 AC091390.4-202ENST00000476426 537 ntBASIC19.55■□□□□ 0.72
LHX3Q9UBR4 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC19.55■□□□□ 0.72
LHX3Q9UBR4 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC19.55■□□□□ 0.72
LHX3Q9UBR4 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
LHX3Q9UBR4 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC19.55■□□□□ 0.72
LHX3Q9UBR4 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC19.55■□□□□ 0.72
LHX3Q9UBR4 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC19.55■□□□□ 0.72
LHX3Q9UBR4 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC19.55■□□□□ 0.72
LHX3Q9UBR4 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC19.55■□□□□ 0.72
LHX3Q9UBR4 AC011298.2-201ENST00000617989 482 ntBASIC19.55■□□□□ 0.72
LHX3Q9UBR4 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC19.55■□□□□ 0.72
LHX3Q9UBR4 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
LHX3Q9UBR4 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC19.55■□□□□ 0.72
LHX3Q9UBR4 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
LHX3Q9UBR4 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC19.55■□□□□ 0.72
LHX3Q9UBR4 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
LHX3Q9UBR4 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
LHX3Q9UBR4 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC19.55■□□□□ 0.72
LHX3Q9UBR4 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC19.54■□□□□ 0.72
LHX3Q9UBR4 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
LHX3Q9UBR4 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC19.54■□□□□ 0.72
LHX3Q9UBR4 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
LHX3Q9UBR4 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
LHX3Q9UBR4 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC19.54■□□□□ 0.72
LHX3Q9UBR4 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC19.54■□□□□ 0.72
LHX3Q9UBR4 GLRB-205ENST00000512619 728 ntTSL 3 BASIC19.54■□□□□ 0.72
LHX3Q9UBR4 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC19.54■□□□□ 0.72
LHX3Q9UBR4 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC19.54■□□□□ 0.72
LHX3Q9UBR4 AC130371.2-201ENST00000619443 611 ntBASIC19.54■□□□□ 0.72
LHX3Q9UBR4 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC19.54■□□□□ 0.72
LHX3Q9UBR4 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC19.54■□□□□ 0.72
LHX3Q9UBR4 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC19.54■□□□□ 0.72
LHX3Q9UBR4 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
LHX3Q9UBR4 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC19.54■□□□□ 0.72
LHX3Q9UBR4 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
LHX3Q9UBR4 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
LHX3Q9UBR4 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
LHX3Q9UBR4 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC19.54■□□□□ 0.72
LHX3Q9UBR4 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC19.54■□□□□ 0.72
LHX3Q9UBR4 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC19.53■□□□□ 0.72
LHX3Q9UBR4 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC19.53■□□□□ 0.72
LHX3Q9UBR4 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC19.53■□□□□ 0.72
LHX3Q9UBR4 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC19.53■□□□□ 0.72
LHX3Q9UBR4 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
LHX3Q9UBR4 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC19.53■□□□□ 0.72
LHX3Q9UBR4 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
LHX3Q9UBR4 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC19.53■□□□□ 0.72
LHX3Q9UBR4 AC103746.1-201ENST00000617440 1133 ntTSL 3 BASIC19.53■□□□□ 0.72
LHX3Q9UBR4 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
LHX3Q9UBR4 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC19.53■□□□□ 0.72
LHX3Q9UBR4 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC19.53■□□□□ 0.72
LHX3Q9UBR4 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
LHX3Q9UBR4 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC19.53■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 23.1 ms