Protein–RNA interactions for Protein: Q9H211

CDT1, DNA replication factor Cdt1, humanhuman

Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDT1Q9H211 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC21.03■□□□□ 0.96
CDT1Q9H211 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
CDT1Q9H211 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC21.03■□□□□ 0.96
CDT1Q9H211 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC21.03■□□□□ 0.96
CDT1Q9H211 BID-204ENST00000399767 2129 ntTSL 2 BASIC21.03■□□□□ 0.96
CDT1Q9H211 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC21.03■□□□□ 0.96
CDT1Q9H211 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC21.03■□□□□ 0.96
CDT1Q9H211 GLRB-205ENST00000512619 728 ntTSL 3 BASIC21.03■□□□□ 0.96
CDT1Q9H211 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC21.03■□□□□ 0.96
CDT1Q9H211 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC21.03■□□□□ 0.96
CDT1Q9H211 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC21.03■□□□□ 0.96
CDT1Q9H211 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC21.03■□□□□ 0.96
CDT1Q9H211 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC21.03■□□□□ 0.96
CDT1Q9H211 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC21.03■□□□□ 0.96
CDT1Q9H211 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC21.03■□□□□ 0.96
CDT1Q9H211 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
CDT1Q9H211 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC21.03■□□□□ 0.96
CDT1Q9H211 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC21.03■□□□□ 0.96
CDT1Q9H211 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
CDT1Q9H211 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC21.03■□□□□ 0.96
CDT1Q9H211 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC21.03■□□□□ 0.96
CDT1Q9H211 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
CDT1Q9H211 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC21.02■□□□□ 0.96
CDT1Q9H211 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC21.02■□□□□ 0.96
CDT1Q9H211 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
CDT1Q9H211 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC21.02■□□□□ 0.96
CDT1Q9H211 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC21.02■□□□□ 0.96
CDT1Q9H211 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
CDT1Q9H211 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC21.02■□□□□ 0.96
CDT1Q9H211 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
CDT1Q9H211 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
CDT1Q9H211 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
CDT1Q9H211 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
CDT1Q9H211 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
CDT1Q9H211 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
CDT1Q9H211 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC21.02■□□□□ 0.96
CDT1Q9H211 DERL1-203ENST00000419562 918 ntTSL 2 BASIC21.02■□□□□ 0.96
CDT1Q9H211 ECEL1P3-201ENST00000427961 737 ntBASIC21.02■□□□□ 0.96
CDT1Q9H211 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC21.02■□□□□ 0.96
CDT1Q9H211 FDX2-206ENST00000492239 773 ntTSL 2 BASIC21.02■□□□□ 0.96
CDT1Q9H211 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC21.02■□□□□ 0.96
CDT1Q9H211 AC133561.5-201ENST00000635547 218 ntBASIC21.02■□□□□ 0.96
CDT1Q9H211 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
CDT1Q9H211 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
CDT1Q9H211 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC21.02■□□□□ 0.96
CDT1Q9H211 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC21.02■□□□□ 0.96
CDT1Q9H211 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
CDT1Q9H211 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
CDT1Q9H211 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC21.02■□□□□ 0.95
CDT1Q9H211 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC21.01■□□□□ 0.95
CDT1Q9H211 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC21.01■□□□□ 0.95
CDT1Q9H211 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC21.01■□□□□ 0.95
CDT1Q9H211 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC21.01■□□□□ 0.95
CDT1Q9H211 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC21.01■□□□□ 0.95
CDT1Q9H211 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC21.01■□□□□ 0.95
CDT1Q9H211 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CDT1Q9H211 PRR31-201ENST00000371629 978 ntTSL 2 BASIC21.01■□□□□ 0.95
CDT1Q9H211 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CDT1Q9H211 FAM207BP-201ENST00000447172 505 ntBASIC21.01■□□□□ 0.95
CDT1Q9H211 AC097488.1-201ENST00000507834 756 ntBASIC21.01■□□□□ 0.95
CDT1Q9H211 AP005242.2-201ENST00000580065 1175 ntBASIC21.01■□□□□ 0.95
CDT1Q9H211 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC21.01■□□□□ 0.95
CDT1Q9H211 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC21.01■□□□□ 0.95
CDT1Q9H211 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC21.01■□□□□ 0.95
CDT1Q9H211 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC21.01■□□□□ 0.95
CDT1Q9H211 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC21.01■□□□□ 0.95
CDT1Q9H211 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CDT1Q9H211 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CDT1Q9H211 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CDT1Q9H211 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CDT1Q9H211 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC21.01■□□□□ 0.95
CDT1Q9H211 CYP2D8P-201ENST00000433633 1490 ntBASIC21.01■□□□□ 0.95
CDT1Q9H211 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC21■□□□□ 0.95
CDT1Q9H211 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC21■□□□□ 0.95
CDT1Q9H211 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
CDT1Q9H211 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
CDT1Q9H211 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC21■□□□□ 0.95
CDT1Q9H211 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC21■□□□□ 0.95
CDT1Q9H211 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC21■□□□□ 0.95
CDT1Q9H211 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC21■□□□□ 0.95
CDT1Q9H211 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC21■□□□□ 0.95
CDT1Q9H211 SLC25A1P4-201ENST00000567977 778 ntBASIC21■□□□□ 0.95
CDT1Q9H211 AC012306.2-201ENST00000609350 630 ntBASIC21■□□□□ 0.95
CDT1Q9H211 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC21■□□□□ 0.95
CDT1Q9H211 AFG3L1P-217ENST00000557444 2447 ntBASIC21■□□□□ 0.95
CDT1Q9H211 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC21■□□□□ 0.95
CDT1Q9H211 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
CDT1Q9H211 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC21■□□□□ 0.95
CDT1Q9H211 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC20.99■□□□□ 0.95
CDT1Q9H211 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
CDT1Q9H211 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CDT1Q9H211 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC20.99■□□□□ 0.95
CDT1Q9H211 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC20.99■□□□□ 0.95
CDT1Q9H211 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CDT1Q9H211 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CDT1Q9H211 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CDT1Q9H211 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC20.99■□□□□ 0.95
CDT1Q9H211 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
CDT1Q9H211 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC20.99■□□□□ 0.95
CDT1Q9H211 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 57.7 ms