Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
CCDC28BQ9BUN5 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
CCDC28BQ9BUN5 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CCDC28BQ9BUN5 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.61
CCDC28BQ9BUN5 ZNF815P-204ENST00000434898 1737 ntBASIC18.83■□□□□ 0.61
CCDC28BQ9BUN5 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
CCDC28BQ9BUN5 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC18.83■□□□□ 0.61
CCDC28BQ9BUN5 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.61
CCDC28BQ9BUN5 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC18.83■□□□□ 0.61
CCDC28BQ9BUN5 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
CCDC28BQ9BUN5 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.61
CCDC28BQ9BUN5 NOC2LP2-201ENST00000407594 1944 ntBASIC18.83■□□□□ 0.6
CCDC28BQ9BUN5 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC18.83■□□□□ 0.6
CCDC28BQ9BUN5 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
CCDC28BQ9BUN5 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
CCDC28BQ9BUN5 CCDC160-201ENST00000370809 1299 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.6
CCDC28BQ9BUN5 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
CCDC28BQ9BUN5 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC18.83■□□□□ 0.6
CCDC28BQ9BUN5 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC18.83■□□□□ 0.6
CCDC28BQ9BUN5 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC18.83■□□□□ 0.6
CCDC28BQ9BUN5 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC18.83■□□□□ 0.6
CCDC28BQ9BUN5 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC18.83■□□□□ 0.6
CCDC28BQ9BUN5 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
CCDC28BQ9BUN5 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
CCDC28BQ9BUN5 EPB41L3-207ENST00000545076 3190 ntAPPRIS ALT2 TSL 2 BASIC18.83■□□□□ 0.6
CCDC28BQ9BUN5 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.6
CCDC28BQ9BUN5 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC18.83■□□□□ 0.6
CCDC28BQ9BUN5 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
CCDC28BQ9BUN5 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC18.83■□□□□ 0.6
CCDC28BQ9BUN5 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC18.83■□□□□ 0.6
CCDC28BQ9BUN5 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
CCDC28BQ9BUN5 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC18.82■□□□□ 0.6
CCDC28BQ9BUN5 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
CCDC28BQ9BUN5 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CCDC28BQ9BUN5 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC18.82■□□□□ 0.6
CCDC28BQ9BUN5 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
CCDC28BQ9BUN5 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC18.82■□□□□ 0.6
CCDC28BQ9BUN5 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC18.82■□□□□ 0.6
CCDC28BQ9BUN5 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
CCDC28BQ9BUN5 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CCDC28BQ9BUN5 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
CCDC28BQ9BUN5 MZB1-201ENST00000302125 825 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CCDC28BQ9BUN5 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
CCDC28BQ9BUN5 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC18.82■□□□□ 0.6
CCDC28BQ9BUN5 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC18.82■□□□□ 0.6
CCDC28BQ9BUN5 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC18.82■□□□□ 0.6
CCDC28BQ9BUN5 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC18.82■□□□□ 0.6
CCDC28BQ9BUN5 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC18.82■□□□□ 0.6
CCDC28BQ9BUN5 Z98044.1-201ENST00000632503 1764 ntBASIC18.82■□□□□ 0.6
CCDC28BQ9BUN5 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
CCDC28BQ9BUN5 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC18.82■□□□□ 0.6
CCDC28BQ9BUN5 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CCDC28BQ9BUN5 IRS2-201ENST00000375856 8138 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CCDC28BQ9BUN5 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC18.82■□□□□ 0.6
CCDC28BQ9BUN5 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CCDC28BQ9BUN5 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CCDC28BQ9BUN5 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CCDC28BQ9BUN5 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CCDC28BQ9BUN5 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CCDC28BQ9BUN5 AC090164.3-201ENST00000610780 2143 ntBASIC18.82■□□□□ 0.6
CCDC28BQ9BUN5 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC18.81■□□□□ 0.6
CCDC28BQ9BUN5 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CCDC28BQ9BUN5 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CCDC28BQ9BUN5 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CCDC28BQ9BUN5 USP49-202ENST00000373010 2446 ntTSL 5 BASIC18.81■□□□□ 0.6
CCDC28BQ9BUN5 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC18.81■□□□□ 0.6
CCDC28BQ9BUN5 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CCDC28BQ9BUN5 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
CCDC28BQ9BUN5 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CCDC28BQ9BUN5 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CCDC28BQ9BUN5 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CCDC28BQ9BUN5 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CCDC28BQ9BUN5 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
CCDC28BQ9BUN5 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC18.81■□□□□ 0.6
CCDC28BQ9BUN5 SPI1-203ENST00000533030 661 ntTSL 2 BASIC18.81■□□□□ 0.6
CCDC28BQ9BUN5 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC18.81■□□□□ 0.6
CCDC28BQ9BUN5 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CCDC28BQ9BUN5 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC18.81■□□□□ 0.6
CCDC28BQ9BUN5 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CCDC28BQ9BUN5 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
CCDC28BQ9BUN5 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CCDC28BQ9BUN5 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
CCDC28BQ9BUN5 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC18.81■□□□□ 0.6
CCDC28BQ9BUN5 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CCDC28BQ9BUN5 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC18.81■□□□□ 0.6
CCDC28BQ9BUN5 RBL2-201ENST00000262133 4906 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CCDC28BQ9BUN5 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
CCDC28BQ9BUN5 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CCDC28BQ9BUN5 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CCDC28BQ9BUN5 USP39-202ENST00000409025 1946 ntTSL 5 BASIC18.8■□□□□ 0.6
CCDC28BQ9BUN5 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
CCDC28BQ9BUN5 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC18.8■□□□□ 0.6
CCDC28BQ9BUN5 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CCDC28BQ9BUN5 AC104581.1-202ENST00000635932 2618 ntBASIC18.8■□□□□ 0.6
CCDC28BQ9BUN5 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC18.8■□□□□ 0.6
CCDC28BQ9BUN5 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CCDC28BQ9BUN5 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CCDC28BQ9BUN5 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CCDC28BQ9BUN5 CNN2P6-201ENST00000439038 900 ntBASIC18.8■□□□□ 0.6
CCDC28BQ9BUN5 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC18.8■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 35.3 ms