Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
LINC00643Q86TS7 AUNIP-201ENST00000374298 2116 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
LINC00643Q86TS7 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC12.14□□□□□ -0.47
LINC00643Q86TS7 ADAMTS1-201ENST00000284984 5191 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
LINC00643Q86TS7 TJP2-202ENST00000377245 4611 ntAPPRIS P4 TSL 1 (best) BASIC12.14□□□□□ -0.47
LINC00643Q86TS7 PAPD5-202ENST00000436909 4635 ntAPPRIS P1 TSL 2 BASIC12.14□□□□□ -0.47
LINC00643Q86TS7 PIGP-207ENST00000464265 3437 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
LINC00643Q86TS7 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
LINC00643Q86TS7 ANKRD9-204ENST00000559651 1444 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
LINC00643Q86TS7 RNF31-201ENST00000324103 3627 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
LINC00643Q86TS7 MROH1-201ENST00000326134 5183 ntAPPRIS P3 TSL 5 BASIC12.14□□□□□ -0.47
LINC00643Q86TS7 MYLK2-202ENST00000375994 2956 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
LINC00643Q86TS7 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC12.14□□□□□ -0.47
LINC00643Q86TS7 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
LINC00643Q86TS7 MFSD11-202ENST00000355954 2832 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
LINC00643Q86TS7 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
LINC00643Q86TS7 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
LINC00643Q86TS7 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC12.14□□□□□ -0.47
LINC00643Q86TS7 SLC34A2-202ENST00000503434 2174 ntAPPRIS ALT2 TSL 1 (best) BASIC12.14□□□□□ -0.47
LINC00643Q86TS7 CSK-210ENST00000567571 2443 ntAPPRIS P1 TSL 2 BASIC12.14□□□□□ -0.47
LINC00643Q86TS7 AC080080.1-201ENST00000625121 2420 ntBASIC12.14□□□□□ -0.47
LINC00643Q86TS7 GUCD1-207ENST00000447813 895 ntTSL 3 BASIC12.14□□□□□ -0.47
LINC00643Q86TS7 LTC4S-205ENST00000486713 496 ntTSL 2 BASIC12.14□□□□□ -0.47
LINC00643Q86TS7 TTC39C-209ENST00000584250 1048 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
LINC00643Q86TS7 VANGL2-201ENST00000368061 5340 ntAPPRIS P1 TSL 2 BASIC12.14□□□□□ -0.47
LINC00643Q86TS7 STAMBPL1-203ENST00000371926 2532 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
LINC00643Q86TS7 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
LINC00643Q86TS7 SLC4A3-204ENST00000373760 4134 ntAPPRIS P1 TSL 5 BASIC12.14□□□□□ -0.47
LINC00643Q86TS7 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC12.14□□□□□ -0.47
LINC00643Q86TS7 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
LINC00643Q86TS7 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC12.14□□□□□ -0.47
LINC00643Q86TS7 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC12.14□□□□□ -0.47
LINC00643Q86TS7 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC12.14□□□□□ -0.47
LINC00643Q86TS7 RUNX1-201ENST00000300305 6222 ntAPPRIS P3 TSL 1 (best) BASIC12.14□□□□□ -0.47
LINC00643Q86TS7 AVPR1B-201ENST00000367126 2237 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
LINC00643Q86TS7 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC12.14□□□□□ -0.47
LINC00643Q86TS7 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
LINC00643Q86TS7 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC12.14□□□□□ -0.47
LINC00643Q86TS7 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC12.14□□□□□ -0.47
LINC00643Q86TS7 LTBP2-201ENST00000261978 8567 ntAPPRIS P2 TSL 1 (best) BASIC12.14□□□□□ -0.47
LINC00643Q86TS7 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
LINC00643Q86TS7 TAF1D-203ENST00000448108 2082 ntAPPRIS P1 TSL 5 BASIC12.14□□□□□ -0.47
LINC00643Q86TS7 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC12.13□□□□□ -0.47
LINC00643Q86TS7 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC12.13□□□□□ -0.47
LINC00643Q86TS7 DUSP8-202ENST00000397374 4480 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
LINC00643Q86TS7 PPM1E-201ENST00000308249 6542 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
LINC00643Q86TS7 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
LINC00643Q86TS7 HIBCH-201ENST00000359678 1939 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
LINC00643Q86TS7 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC12.13□□□□□ -0.47
LINC00643Q86TS7 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
LINC00643Q86TS7 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
LINC00643Q86TS7 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC12.13□□□□□ -0.47
LINC00643Q86TS7 SLC39A5-201ENST00000266980 2031 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
LINC00643Q86TS7 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC12.13□□□□□ -0.47
LINC00643Q86TS7 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
LINC00643Q86TS7 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC12.13□□□□□ -0.47
LINC00643Q86TS7 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC12.13□□□□□ -0.47
LINC00643Q86TS7 CTXN1-201ENST00000318978 1274 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
LINC00643Q86TS7 FAM120AOS-201ENST00000375412 2771 ntAPPRIS P3 TSL 1 (best) BASIC12.13□□□□□ -0.47
LINC00643Q86TS7 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
LINC00643Q86TS7 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC12.13□□□□□ -0.47
LINC00643Q86TS7 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC12.13□□□□□ -0.47
LINC00643Q86TS7 PDE1C-201ENST00000321453 2898 ntAPPRIS ALT1 TSL 2 BASIC12.13□□□□□ -0.47
LINC00643Q86TS7 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
LINC00643Q86TS7 ADRB3-201ENST00000345060 2950 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
LINC00643Q86TS7 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC12.13□□□□□ -0.47
LINC00643Q86TS7 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC12.13□□□□□ -0.47
LINC00643Q86TS7 IRGQ-201ENST00000422989 9685 ntAPPRIS P1 TSL 5 BASIC12.13□□□□□ -0.47
LINC00643Q86TS7 RASL10A-201ENST00000216101 1490 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
LINC00643Q86TS7 CTPS2-201ENST00000359276 3629 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
LINC00643Q86TS7 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC12.13□□□□□ -0.47
LINC00643Q86TS7 TP53INP1-201ENST00000342697 5638 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
LINC00643Q86TS7 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC12.13□□□□□ -0.47
LINC00643Q86TS7 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC12.13□□□□□ -0.47
LINC00643Q86TS7 MDFIC-202ENST00000393486 4393 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
LINC00643Q86TS7 IFT74-203ENST00000433700 2119 ntAPPRIS P1 TSL 5 BASIC12.13□□□□□ -0.47
LINC00643Q86TS7 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC12.13□□□□□ -0.47
LINC00643Q86TS7 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC12.13□□□□□ -0.47
LINC00643Q86TS7 CCNA2-201ENST00000274026 2797 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
LINC00643Q86TS7 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC12.12□□□□□ -0.47
LINC00643Q86TS7 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC12.12□□□□□ -0.47
LINC00643Q86TS7 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC12.12□□□□□ -0.47
LINC00643Q86TS7 SFXN1-201ENST00000321442 4231 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
LINC00643Q86TS7 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
LINC00643Q86TS7 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC12.12□□□□□ -0.47
LINC00643Q86TS7 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC12.12□□□□□ -0.47
LINC00643Q86TS7 SHTN1-202ENST00000355371 5361 ntAPPRIS ALT1 TSL 2 BASIC12.12□□□□□ -0.47
LINC00643Q86TS7 C7orf31-201ENST00000283905 2673 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
LINC00643Q86TS7 ENTPD6-209ENST00000433259 2654 ntTSL 5 BASIC12.12□□□□□ -0.47
LINC00643Q86TS7 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
LINC00643Q86TS7 TMEM184A-201ENST00000297477 6276 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
LINC00643Q86TS7 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
LINC00643Q86TS7 TSC2-202ENST00000350773 5532 ntAPPRIS ALT2 TSL 1 (best) BASIC12.12□□□□□ -0.47
LINC00643Q86TS7 NKIRAS2-208ENST00000462043 585 ntTSL 4 BASIC12.12□□□□□ -0.47
LINC00643Q86TS7 LHFPL2-207ENST00000515007 4680 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
LINC00643Q86TS7 MIR1-1HG-202ENST00000624914 1220 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
LINC00643Q86TS7 H6PD-201ENST00000377403 9146 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
LINC00643Q86TS7 AC078883.1-202ENST00000450443 1397 ntTSL 3 BASIC12.12□□□□□ -0.47
LINC00643Q86TS7 STOX1-204ENST00000399169 3281 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
LINC00643Q86TS7 KIAA1217-206ENST00000376462 6123 ntAPPRIS ALT2 TSL 1 (best) BASIC12.12□□□□□ -0.47
Retrieved 100 of 98,524 protein–RNA pairs in 58.6 ms