Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 TRIM33-201ENST00000358465 8339 ntAPPRIS P4 TSL 1 (best) BASIC16.06■□□□□ 0.16
PDLIM3Q53GG5 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
PDLIM3Q53GG5 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
PDLIM3Q53GG5 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
PDLIM3Q53GG5 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
PDLIM3Q53GG5 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
PDLIM3Q53GG5 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
PDLIM3Q53GG5 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
PDLIM3Q53GG5 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
PDLIM3Q53GG5 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
PDLIM3Q53GG5 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC16.05■□□□□ 0.16
PDLIM3Q53GG5 GOLGA2P11-201ENST00000562660 1621 ntBASIC16.05■□□□□ 0.16
PDLIM3Q53GG5 AC009237.14-201ENST00000609975 1594 ntBASIC16.05■□□□□ 0.16
PDLIM3Q53GG5 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC16.05■□□□□ 0.16
PDLIM3Q53GG5 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC16.05■□□□□ 0.16
PDLIM3Q53GG5 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC16.05■□□□□ 0.16
PDLIM3Q53GG5 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC16.05■□□□□ 0.16
PDLIM3Q53GG5 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
PDLIM3Q53GG5 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
PDLIM3Q53GG5 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
PDLIM3Q53GG5 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC16.05■□□□□ 0.16
PDLIM3Q53GG5 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC16.05■□□□□ 0.16
PDLIM3Q53GG5 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC16.05■□□□□ 0.16
PDLIM3Q53GG5 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC16.05■□□□□ 0.16
PDLIM3Q53GG5 RPPH1-201ENST00000516869 333 ntBASIC16.05■□□□□ 0.16
PDLIM3Q53GG5 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC16.05■□□□□ 0.16
PDLIM3Q53GG5 ZNF264-205ENST00000599653 705 ntTSL 2 BASIC16.05■□□□□ 0.16
PDLIM3Q53GG5 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC16.05■□□□□ 0.16
PDLIM3Q53GG5 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC16.05■□□□□ 0.16
PDLIM3Q53GG5 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
PDLIM3Q53GG5 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC16.05■□□□□ 0.16
PDLIM3Q53GG5 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
PDLIM3Q53GG5 SYNPO-201ENST00000307662 5374 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
PDLIM3Q53GG5 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
PDLIM3Q53GG5 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
PDLIM3Q53GG5 COBLL1-201ENST00000342193 4898 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
PDLIM3Q53GG5 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC16.05■□□□□ 0.16
PDLIM3Q53GG5 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC16.04■□□□□ 0.16
PDLIM3Q53GG5 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC16.04■□□□□ 0.16
PDLIM3Q53GG5 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
PDLIM3Q53GG5 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
PDLIM3Q53GG5 TACC1-202ENST00000317827 7802 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
PDLIM3Q53GG5 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
PDLIM3Q53GG5 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
PDLIM3Q53GG5 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
PDLIM3Q53GG5 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
PDLIM3Q53GG5 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
PDLIM3Q53GG5 C15orf48-201ENST00000344300 875 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
PDLIM3Q53GG5 MLLT10-205ENST00000377100 1136 ntTSL 2 BASIC16.04■□□□□ 0.16
PDLIM3Q53GG5 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC16.04■□□□□ 0.16
PDLIM3Q53GG5 PRKY-204ENST00000533551 1019 ntBASIC16.04■□□□□ 0.16
PDLIM3Q53GG5 BRWD1-AS2-201ENST00000603064 1028 ntBASIC16.04■□□□□ 0.16
PDLIM3Q53GG5 AC016405.3-201ENST00000607710 860 ntBASIC16.04■□□□□ 0.16
PDLIM3Q53GG5 AL356652.1-201ENST00000615962 565 ntBASIC16.04■□□□□ 0.16
PDLIM3Q53GG5 MAPK14-210ENST00000622903 1003 ntTSL 5 BASIC16.04■□□□□ 0.16
PDLIM3Q53GG5 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
PDLIM3Q53GG5 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
PDLIM3Q53GG5 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
PDLIM3Q53GG5 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC16.04■□□□□ 0.16
PDLIM3Q53GG5 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
PDLIM3Q53GG5 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
PDLIM3Q53GG5 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
PDLIM3Q53GG5 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC16.04■□□□□ 0.16
PDLIM3Q53GG5 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
PDLIM3Q53GG5 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
PDLIM3Q53GG5 PHKA1-201ENST00000339490 6121 ntAPPRIS ALT1 TSL 1 (best) BASIC16.04■□□□□ 0.16
PDLIM3Q53GG5 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
PDLIM3Q53GG5 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
PDLIM3Q53GG5 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC16.04■□□□□ 0.16
PDLIM3Q53GG5 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
PDLIM3Q53GG5 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
PDLIM3Q53GG5 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC16.03■□□□□ 0.16
PDLIM3Q53GG5 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
PDLIM3Q53GG5 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC16.03■□□□□ 0.16
PDLIM3Q53GG5 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
PDLIM3Q53GG5 DAG1-201ENST00000308775 5522 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
PDLIM3Q53GG5 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC16.03■□□□□ 0.16
PDLIM3Q53GG5 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC16.03■□□□□ 0.16
PDLIM3Q53GG5 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
PDLIM3Q53GG5 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC16.03■□□□□ 0.16
PDLIM3Q53GG5 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC16.03■□□□□ 0.16
PDLIM3Q53GG5 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC16.03■□□□□ 0.16
PDLIM3Q53GG5 FLYWCH2-202ENST00000396958 1036 ntAPPRIS P2 TSL 1 (best) BASIC16.03■□□□□ 0.16
PDLIM3Q53GG5 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC16.03■□□□□ 0.16
PDLIM3Q53GG5 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC16.03■□□□□ 0.16
PDLIM3Q53GG5 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC16.03■□□□□ 0.16
PDLIM3Q53GG5 C1QBPP2-201ENST00000528754 825 ntBASIC16.03■□□□□ 0.16
PDLIM3Q53GG5 PPOX-219ENST00000544598 813 ntTSL 2 BASIC16.03■□□□□ 0.16
PDLIM3Q53GG5 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC16.03■□□□□ 0.16
PDLIM3Q53GG5 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC16.03■□□□□ 0.16
PDLIM3Q53GG5 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC16.03■□□□□ 0.16
PDLIM3Q53GG5 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC16.03■□□□□ 0.16
PDLIM3Q53GG5 PROSER1-201ENST00000352251 5168 ntAPPRIS P2 TSL 1 (best) BASIC16.03■□□□□ 0.16
PDLIM3Q53GG5 LENG8-202ENST00000376514 5146 ntAPPRIS ALT2 TSL 5 BASIC16.03■□□□□ 0.16
PDLIM3Q53GG5 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
PDLIM3Q53GG5 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
PDLIM3Q53GG5 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC16.03■□□□□ 0.16
PDLIM3Q53GG5 OXSR1-201ENST00000311806 4553 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
PDLIM3Q53GG5 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC16.03■□□□□ 0.16
PDLIM3Q53GG5 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC16.02■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 31.3 ms