Protein–RNA interactions for Protein: Q4VC31

CCDC58, Coiled-coil domain-containing protein 58, humanhuman

Predictions only

Length 144 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC58Q4VC31 KLC2-203ENST00000394066 2591 ntTSL 2 BASIC17.3■□□□□ 0.36
CCDC58Q4VC31 KIAA1549-201ENST00000422774 6283 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
CCDC58Q4VC31 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CCDC58Q4VC31 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CCDC58Q4VC31 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
CCDC58Q4VC31 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
CCDC58Q4VC31 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
CCDC58Q4VC31 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CCDC58Q4VC31 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
CCDC58Q4VC31 LINC00472-203ENST00000426635 2958 ntTSL 2 BASIC17.29■□□□□ 0.36
CCDC58Q4VC31 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC17.29■□□□□ 0.36
CCDC58Q4VC31 TMEM255B-202ENST00000375353 6100 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
CCDC58Q4VC31 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
CCDC58Q4VC31 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC17.29■□□□□ 0.36
CCDC58Q4VC31 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC17.29■□□□□ 0.36
CCDC58Q4VC31 UCN-201ENST00000296099 795 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CCDC58Q4VC31 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
CCDC58Q4VC31 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC17.29■□□□□ 0.36
CCDC58Q4VC31 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CCDC58Q4VC31 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
CCDC58Q4VC31 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CCDC58Q4VC31 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC17.29■□□□□ 0.36
CCDC58Q4VC31 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC17.29■□□□□ 0.36
CCDC58Q4VC31 BRI3-207ENST00000539286 699 ntTSL 2 BASIC17.29■□□□□ 0.36
CCDC58Q4VC31 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CCDC58Q4VC31 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CCDC58Q4VC31 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC17.29■□□□□ 0.36
CCDC58Q4VC31 LMTK2-201ENST00000297293 8946 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CCDC58Q4VC31 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC17.29■□□□□ 0.36
CCDC58Q4VC31 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC17.29■□□□□ 0.36
CCDC58Q4VC31 ZDHHC2-201ENST00000262096 6377 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CCDC58Q4VC31 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
CCDC58Q4VC31 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
CCDC58Q4VC31 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CCDC58Q4VC31 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
CCDC58Q4VC31 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
CCDC58Q4VC31 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CCDC58Q4VC31 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
CCDC58Q4VC31 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CCDC58Q4VC31 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CCDC58Q4VC31 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC17.28■□□□□ 0.36
CCDC58Q4VC31 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
CCDC58Q4VC31 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC17.28■□□□□ 0.36
CCDC58Q4VC31 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
CCDC58Q4VC31 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
CCDC58Q4VC31 FAM214B-206ENST00000603301 3256 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CCDC58Q4VC31 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC17.28■□□□□ 0.36
CCDC58Q4VC31 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC17.28■□□□□ 0.36
CCDC58Q4VC31 FGF17-202ENST00000518533 1706 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
CCDC58Q4VC31 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC17.28■□□□□ 0.36
CCDC58Q4VC31 TNFRSF18-202ENST00000379265 705 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
CCDC58Q4VC31 UQCRFS1P1-201ENST00000435169 820 ntBASIC17.28■□□□□ 0.36
CCDC58Q4VC31 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC17.28■□□□□ 0.36
CCDC58Q4VC31 RARRES2P4-201ENST00000514074 484 ntBASIC17.28■□□□□ 0.36
CCDC58Q4VC31 AC023632.3-201ENST00000521633 145 ntBASIC17.28■□□□□ 0.36
CCDC58Q4VC31 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC17.28■□□□□ 0.36
CCDC58Q4VC31 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
CCDC58Q4VC31 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CCDC58Q4VC31 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CCDC58Q4VC31 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC17.28■□□□□ 0.36
CCDC58Q4VC31 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CCDC58Q4VC31 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CCDC58Q4VC31 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC17.28■□□□□ 0.36
CCDC58Q4VC31 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC17.28■□□□□ 0.36
CCDC58Q4VC31 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CCDC58Q4VC31 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CCDC58Q4VC31 MRC2-201ENST00000303375 5988 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CCDC58Q4VC31 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CCDC58Q4VC31 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CCDC58Q4VC31 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CCDC58Q4VC31 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
CCDC58Q4VC31 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC17.27■□□□□ 0.36
CCDC58Q4VC31 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC17.27■□□□□ 0.36
CCDC58Q4VC31 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
CCDC58Q4VC31 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
CCDC58Q4VC31 KRT18P68-201ENST00000392293 1000 ntBASIC17.27■□□□□ 0.36
CCDC58Q4VC31 BMP1-204ENST00000397814 836 ntTSL 4 BASIC17.27■□□□□ 0.36
CCDC58Q4VC31 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC17.27■□□□□ 0.36
CCDC58Q4VC31 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC17.27■□□□□ 0.36
CCDC58Q4VC31 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC17.27■□□□□ 0.36
CCDC58Q4VC31 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC17.27■□□□□ 0.36
CCDC58Q4VC31 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.36
CCDC58Q4VC31 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC17.27■□□□□ 0.35
CCDC58Q4VC31 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
CCDC58Q4VC31 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
CCDC58Q4VC31 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.35
CCDC58Q4VC31 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC17.27■□□□□ 0.35
CCDC58Q4VC31 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC17.27■□□□□ 0.35
CCDC58Q4VC31 GCK-205ENST00000437084 1385 ntTSL 5 BASIC17.27■□□□□ 0.35
CCDC58Q4VC31 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.35
CCDC58Q4VC31 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
CCDC58Q4VC31 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC17.27■□□□□ 0.35
CCDC58Q4VC31 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
CCDC58Q4VC31 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CCDC58Q4VC31 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
CCDC58Q4VC31 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CCDC58Q4VC31 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
CCDC58Q4VC31 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
CCDC58Q4VC31 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
CCDC58Q4VC31 CROCCP3-202ENST00000420820 1947 ntBASIC17.26■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 32.4 ms