Protein–RNA interactions for Protein: Q06945

SOX4, Transcription factor SOX-4, humanhuman

Predicted RBP Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX4Q06945 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC20.77■□□□□ 0.92
SOX4Q06945 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC20.77■□□□□ 0.91
SOX4Q06945 KRT18P22-201ENST00000402024 1347 ntBASIC20.77■□□□□ 0.91
SOX4Q06945 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC20.76■□□□□ 0.91
SOX4Q06945 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC20.76■□□□□ 0.91
SOX4Q06945 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC20.76■□□□□ 0.91
SOX4Q06945 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
SOX4Q06945 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
SOX4Q06945 AEBP2-204ENST00000398864 5099 ntAPPRIS P4 TSL 1 (best) BASIC20.76■□□□□ 0.91
SOX4Q06945 SLC12A2-201ENST00000262461 6885 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
SOX4Q06945 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC20.76■□□□□ 0.91
SOX4Q06945 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC20.76■□□□□ 0.91
SOX4Q06945 TSPY14P-201ENST00000303979 915 ntBASIC20.76■□□□□ 0.91
SOX4Q06945 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC20.76■□□□□ 0.91
SOX4Q06945 MLLT10-205ENST00000377100 1136 ntTSL 2 BASIC20.76■□□□□ 0.91
SOX4Q06945 AC005521.1-201ENST00000393351 872 ntBASIC20.76■□□□□ 0.91
SOX4Q06945 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
SOX4Q06945 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC20.76■□□□□ 0.91
SOX4Q06945 AL139246.2-201ENST00000456687 1297 ntTSL 5 BASIC20.76■□□□□ 0.91
SOX4Q06945 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC20.76■□□□□ 0.91
SOX4Q06945 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC20.76■□□□□ 0.91
SOX4Q06945 AC005363.2-201ENST00000618631 242 ntBASIC20.76■□□□□ 0.91
SOX4Q06945 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
SOX4Q06945 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
SOX4Q06945 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC20.76■□□□□ 0.91
SOX4Q06945 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
SOX4Q06945 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
SOX4Q06945 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
SOX4Q06945 PWWP2AP1-201ENST00000429776 2273 ntBASIC20.75■□□□□ 0.91
SOX4Q06945 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC20.75■□□□□ 0.91
SOX4Q06945 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
SOX4Q06945 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC20.75■□□□□ 0.91
SOX4Q06945 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC20.75■□□□□ 0.91
SOX4Q06945 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC20.75■□□□□ 0.91
SOX4Q06945 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
SOX4Q06945 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC20.75■□□□□ 0.91
SOX4Q06945 BEX3-204ENST00000372645 913 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
SOX4Q06945 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC20.75■□□□□ 0.91
SOX4Q06945 AC113347.1-201ENST00000413321 391 ntBASIC20.75■□□□□ 0.91
SOX4Q06945 CYB561D2-204ENST00000424512 1212 ntAPPRIS P1 TSL 5 BASIC20.75■□□□□ 0.91
SOX4Q06945 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC20.75■□□□□ 0.91
SOX4Q06945 SLC25A3P1-201ENST00000443844 931 ntBASIC20.75■□□□□ 0.91
SOX4Q06945 ECEL1P2-202ENST00000465689 757 ntBASIC20.75■□□□□ 0.91
SOX4Q06945 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC20.75■□□□□ 0.91
SOX4Q06945 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC20.75■□□□□ 0.91
SOX4Q06945 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
SOX4Q06945 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
SOX4Q06945 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
SOX4Q06945 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC20.75■□□□□ 0.91
SOX4Q06945 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
SOX4Q06945 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
SOX4Q06945 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC20.75■□□□□ 0.91
SOX4Q06945 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC20.75■□□□□ 0.91
SOX4Q06945 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
SOX4Q06945 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC20.75■□□□□ 0.91
SOX4Q06945 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
SOX4Q06945 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
SOX4Q06945 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
SOX4Q06945 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC20.74■□□□□ 0.91
SOX4Q06945 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC20.74■□□□□ 0.91
SOX4Q06945 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
SOX4Q06945 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
SOX4Q06945 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC20.74■□□□□ 0.91
SOX4Q06945 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC20.74■□□□□ 0.91
SOX4Q06945 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC20.74■□□□□ 0.91
SOX4Q06945 TSPY1-201ENST00000423647 1171 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
SOX4Q06945 ZNF815P-204ENST00000434898 1737 ntBASIC20.74■□□□□ 0.91
SOX4Q06945 EGLN1P1-201ENST00000531623 762 ntBASIC20.74■□□□□ 0.91
SOX4Q06945 TK2-213ENST00000563369 882 ntTSL 5 BASIC20.74■□□□□ 0.91
SOX4Q06945 MAP3K14-AS1-202ENST00000585351 893 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
SOX4Q06945 CYGB-204ENST00000589342 815 ntTSL 3 BASIC20.74■□□□□ 0.91
SOX4Q06945 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC20.74■□□□□ 0.91
SOX4Q06945 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
SOX4Q06945 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC20.74■□□□□ 0.91
SOX4Q06945 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
SOX4Q06945 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
SOX4Q06945 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC20.73■□□□□ 0.91
SOX4Q06945 PKD1P6-201ENST00000343738 4769 ntBASIC20.73■□□□□ 0.91
SOX4Q06945 AC073508.3-201ENST00000619697 1419 ntBASIC20.73■□□□□ 0.91
SOX4Q06945 TERF1P1-201ENST00000311003 1181 ntBASIC20.73■□□□□ 0.91
SOX4Q06945 MIR1224-201ENST00000408193 85 ntBASIC20.73■□□□□ 0.91
SOX4Q06945 TMPOP1-202ENST00000424642 1267 ntBASIC20.73■□□□□ 0.91
SOX4Q06945 KRT18P57-201ENST00000443599 1254 ntBASIC20.73■□□□□ 0.91
SOX4Q06945 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
SOX4Q06945 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.91
SOX4Q06945 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC20.73■□□□□ 0.91
SOX4Q06945 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC20.73■□□□□ 0.91
SOX4Q06945 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
SOX4Q06945 GSTM4-201ENST00000326729 1321 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
SOX4Q06945 AUTS2-203ENST00000406775 5950 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
SOX4Q06945 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC20.73■□□□□ 0.91
SOX4Q06945 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC20.73■□□□□ 0.91
SOX4Q06945 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
SOX4Q06945 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
SOX4Q06945 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC20.72■□□□□ 0.91
SOX4Q06945 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
SOX4Q06945 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC20.72■□□□□ 0.91
SOX4Q06945 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
SOX4Q06945 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
SOX4Q06945 SDHAP1-207ENST00000440850 2000 ntBASIC20.72■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 41.4 ms