Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC17.96■□□□□ 0.47
RNF4P78317 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
RNF4P78317 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
RNF4P78317 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC17.96■□□□□ 0.47
RNF4P78317 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC17.96■□□□□ 0.47
RNF4P78317 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
RNF4P78317 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC17.96■□□□□ 0.47
RNF4P78317 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC17.96■□□□□ 0.47
RNF4P78317 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC17.96■□□□□ 0.47
RNF4P78317 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
RNF4P78317 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
RNF4P78317 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC17.96■□□□□ 0.47
RNF4P78317 AC026271.3-201ENST00000571884 352 ntBASIC17.96■□□□□ 0.47
RNF4P78317 DECR2-212ENST00000627716 352 ntTSL 2 BASIC17.96■□□□□ 0.47
RNF4P78317 ABBA01031674.1-201ENST00000635145 728 ntBASIC17.96■□□□□ 0.47
RNF4P78317 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
RNF4P78317 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC17.96■□□□□ 0.47
RNF4P78317 ANKRD18DP-204ENST00000455355 1975 ntBASIC17.96■□□□□ 0.47
RNF4P78317 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC17.96■□□□□ 0.47
RNF4P78317 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
RNF4P78317 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
RNF4P78317 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC17.96■□□□□ 0.46
RNF4P78317 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.46
RNF4P78317 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC17.95■□□□□ 0.46
RNF4P78317 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
RNF4P78317 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC17.95■□□□□ 0.46
RNF4P78317 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC17.95■□□□□ 0.46
RNF4P78317 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
RNF4P78317 BID-204ENST00000399767 2129 ntTSL 2 BASIC17.95■□□□□ 0.46
RNF4P78317 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
RNF4P78317 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
RNF4P78317 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
RNF4P78317 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
RNF4P78317 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
RNF4P78317 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
RNF4P78317 RAI14-201ENST00000265109 5092 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
RNF4P78317 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC17.95■□□□□ 0.46
RNF4P78317 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
RNF4P78317 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC17.95■□□□□ 0.46
RNF4P78317 AL160286.2-201ENST00000567150 934 ntBASIC17.95■□□□□ 0.46
RNF4P78317 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
RNF4P78317 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC17.95■□□□□ 0.46
RNF4P78317 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC17.95■□□□□ 0.46
RNF4P78317 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
RNF4P78317 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
RNF4P78317 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC17.95■□□□□ 0.46
RNF4P78317 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
RNF4P78317 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
RNF4P78317 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
RNF4P78317 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.46
RNF4P78317 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC17.94■□□□□ 0.46
RNF4P78317 TREX1-205ENST00000625293 1783 ntBASIC17.94■□□□□ 0.46
RNF4P78317 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC17.94■□□□□ 0.46
RNF4P78317 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
RNF4P78317 LINC01465-201ENST00000408887 1940 ntBASIC17.94■□□□□ 0.46
RNF4P78317 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC17.94■□□□□ 0.46
RNF4P78317 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC17.94■□□□□ 0.46
RNF4P78317 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC17.94■□□□□ 0.46
RNF4P78317 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC17.94■□□□□ 0.46
RNF4P78317 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC17.94■□□□□ 0.46
RNF4P78317 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
RNF4P78317 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC17.94■□□□□ 0.46
RNF4P78317 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC17.94■□□□□ 0.46
RNF4P78317 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC17.94■□□□□ 0.46
RNF4P78317 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC17.94■□□□□ 0.46
RNF4P78317 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC17.94■□□□□ 0.46
RNF4P78317 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
RNF4P78317 AC116562.2-201ENST00000507042 360 ntBASIC17.94■□□□□ 0.46
RNF4P78317 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC17.94■□□□□ 0.46
RNF4P78317 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC17.94■□□□□ 0.46
RNF4P78317 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
RNF4P78317 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC17.94■□□□□ 0.46
RNF4P78317 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC17.94■□□□□ 0.46
RNF4P78317 REXO1L10P-201ENST00000615707 1290 ntBASIC17.94■□□□□ 0.46
RNF4P78317 REXO1L12P-201ENST00000622156 912 ntBASIC17.94■□□□□ 0.46
RNF4P78317 PWWP2AP1-201ENST00000429776 2273 ntBASIC17.94■□□□□ 0.46
RNF4P78317 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC17.94■□□□□ 0.46
RNF4P78317 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
RNF4P78317 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC17.94■□□□□ 0.46
RNF4P78317 AC138932.1-201ENST00000534164 6830 ntBASIC17.94■□□□□ 0.46
RNF4P78317 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
RNF4P78317 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
RNF4P78317 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC17.94■□□□□ 0.46
RNF4P78317 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC17.94■□□□□ 0.46
RNF4P78317 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC17.94■□□□□ 0.46
RNF4P78317 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
RNF4P78317 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
RNF4P78317 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC17.94■□□□□ 0.46
RNF4P78317 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
RNF4P78317 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC17.93■□□□□ 0.46
RNF4P78317 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
RNF4P78317 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
RNF4P78317 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC17.93■□□□□ 0.46
RNF4P78317 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
RNF4P78317 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC17.93■□□□□ 0.46
RNF4P78317 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC17.93■□□□□ 0.46
RNF4P78317 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
RNF4P78317 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
RNF4P78317 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC17.93■□□□□ 0.46
RNF4P78317 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 51.7 ms