Protein–RNA interactions for Protein: P56589

PEX3, Peroxisomal biogenesis factor 3, humanhuman

Predictions only

Length 373 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PEX3P56589 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
PEX3P56589 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
PEX3P56589 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
PEX3P56589 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
PEX3P56589 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
PEX3P56589 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC21.39■■□□□ 1.01
PEX3P56589 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC21.38■■□□□ 1.01
PEX3P56589 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC21.38■■□□□ 1.01
PEX3P56589 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
PEX3P56589 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
PEX3P56589 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC21.38■■□□□ 1.01
PEX3P56589 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC21.38■■□□□ 1.01
PEX3P56589 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
PEX3P56589 AC004980.1-204ENST00000429707 299 ntBASIC21.38■■□□□ 1.01
PEX3P56589 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC21.38■■□□□ 1.01
PEX3P56589 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
PEX3P56589 ABBA01031674.1-201ENST00000635145 728 ntBASIC21.38■■□□□ 1.01
PEX3P56589 ZNF510-203ENST00000375231 5616 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
PEX3P56589 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC21.38■■□□□ 1.01
PEX3P56589 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
PEX3P56589 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC21.38■■□□□ 1.01
PEX3P56589 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC21.37■■□□□ 1.01
PEX3P56589 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
PEX3P56589 SLC25A24-204ENST00000569674 2357 ntBASIC21.37■■□□□ 1.01
PEX3P56589 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC21.37■■□□□ 1.01
PEX3P56589 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC21.37■■□□□ 1.01
PEX3P56589 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC21.37■■□□□ 1.01
PEX3P56589 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC21.37■■□□□ 1.01
PEX3P56589 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC21.37■■□□□ 1.01
PEX3P56589 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC21.37■■□□□ 1.01
PEX3P56589 AC026471.5-201ENST00000615068 467 ntBASIC21.37■■□□□ 1.01
PEX3P56589 AC131212.4-201ENST00000623606 975 ntBASIC21.37■■□□□ 1.01
PEX3P56589 AL031985.4-201ENST00000642138 673 ntBASIC21.37■■□□□ 1.01
PEX3P56589 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC21.37■■□□□ 1.01
PEX3P56589 ZNF815P-204ENST00000434898 1737 ntBASIC21.37■■□□□ 1.01
PEX3P56589 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC21.36■■□□□ 1.01
PEX3P56589 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
PEX3P56589 POLI-202ENST00000406285 2030 ntTSL 2 BASIC21.36■■□□□ 1.01
PEX3P56589 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
PEX3P56589 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC21.36■■□□□ 1.01
PEX3P56589 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
PEX3P56589 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
PEX3P56589 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC21.36■■□□□ 1.01
PEX3P56589 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC21.36■■□□□ 1.01
PEX3P56589 AL160286.2-201ENST00000567150 934 ntBASIC21.36■■□□□ 1.01
PEX3P56589 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC21.36■■□□□ 1.01
PEX3P56589 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC21.36■■□□□ 1.01
PEX3P56589 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC21.36■■□□□ 1.01
PEX3P56589 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC21.36■■□□□ 1.01
PEX3P56589 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
PEX3P56589 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC21.35■■□□□ 1.01
PEX3P56589 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC21.35■■□□□ 1.01
PEX3P56589 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC21.35■■□□□ 1.01
PEX3P56589 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
PEX3P56589 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC21.35■■□□□ 1.01
PEX3P56589 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
PEX3P56589 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
PEX3P56589 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC21.35■■□□□ 1.01
PEX3P56589 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC21.35■■□□□ 1.01
PEX3P56589 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC21.35■■□□□ 1.01
PEX3P56589 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
PEX3P56589 AL355355.2-201ENST00000442321 338 ntBASIC21.35■■□□□ 1.01
PEX3P56589 NUDT16P1-203ENST00000513809 620 ntBASIC21.35■■□□□ 1.01
PEX3P56589 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC21.35■■□□□ 1.01
PEX3P56589 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC21.35■■□□□ 1.01
PEX3P56589 MIR4785-201ENST00000585005 73 ntBASIC21.35■■□□□ 1.01
PEX3P56589 AC104417.2-201ENST00000562989 1793 ntBASIC21.35■■□□□ 1.01
PEX3P56589 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
PEX3P56589 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC21.35■■□□□ 1.01
PEX3P56589 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
PEX3P56589 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC21.35■■□□□ 1.01
PEX3P56589 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC21.34■■□□□ 1.01
PEX3P56589 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC21.34■■□□□ 1.01
PEX3P56589 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC21.34■■□□□ 1.01
PEX3P56589 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
PEX3P56589 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.01
PEX3P56589 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
PEX3P56589 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC21.34■■□□□ 1.01
PEX3P56589 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC21.34■■□□□ 1.01
PEX3P56589 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
PEX3P56589 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
PEX3P56589 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC21.34■■□□□ 1.01
PEX3P56589 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC21.34■■□□□ 1.01
PEX3P56589 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC21.34■■□□□ 1.01
PEX3P56589 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
PEX3P56589 DHDH-203ENST00000522614 776 ntTSL 5 BASIC21.34■■□□□ 1.01
PEX3P56589 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.01
PEX3P56589 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC21.34■■□□□ 1.01
PEX3P56589 AP003071.4-201ENST00000562276 1284 ntBASIC21.34■■□□□ 1.01
PEX3P56589 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC21.34■■□□□ 1.01
PEX3P56589 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC21.34■■□□□ 1.01
PEX3P56589 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC21.34■■□□□ 1.01
PEX3P56589 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
PEX3P56589 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC21.34■■□□□ 1.01
PEX3P56589 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC21.33■■□□□ 1.01
PEX3P56589 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC21.33■■□□□ 1.01
PEX3P56589 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1.01
PEX3P56589 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC21.33■■□□□ 1.01
PEX3P56589 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC21.33■■□□□ 1.01
PEX3P56589 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC21.33■■□□□ 1.01
Retrieved 100 of 98,524 protein–RNA pairs in 129.3 ms