Protein–RNA interactions for Protein: P55072

VCP, Transitional endoplasmic reticulum ATPase, humanhuman

Known RBP Predictions only

Length 806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCPP55072 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC20.75■□□□□ 0.91
VCPP55072 KRT126P-201ENST00000549467 1181 ntBASIC20.75■□□□□ 0.91
VCPP55072 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC20.75■□□□□ 0.91
VCPP55072 AC010947.1-201ENST00000623454 693 ntBASIC20.75■□□□□ 0.91
VCPP55072 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC20.75■□□□□ 0.91
VCPP55072 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
VCPP55072 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC20.75■□□□□ 0.91
VCPP55072 DND1-201ENST00000542735 1605 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
VCPP55072 TMEM179-206ENST00000616017 1645 ntBASIC20.75■□□□□ 0.91
VCPP55072 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
VCPP55072 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC20.74■□□□□ 0.91
VCPP55072 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
VCPP55072 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
VCPP55072 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
VCPP55072 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
VCPP55072 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
VCPP55072 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC20.74■□□□□ 0.91
VCPP55072 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
VCPP55072 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
VCPP55072 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC20.74■□□□□ 0.91
VCPP55072 TMA16-209ENST00000513272 803 ntTSL 2 BASIC20.74■□□□□ 0.91
VCPP55072 NUDT16P1-203ENST00000513809 620 ntBASIC20.74■□□□□ 0.91
VCPP55072 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC20.74■□□□□ 0.91
VCPP55072 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
VCPP55072 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
VCPP55072 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
VCPP55072 CD37-204ENST00000535669 1674 ntTSL 2 BASIC20.73■□□□□ 0.91
VCPP55072 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
VCPP55072 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
VCPP55072 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
VCPP55072 SOCS2-210ENST00000551556 1716 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
VCPP55072 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
VCPP55072 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.91
VCPP55072 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
VCPP55072 AL353807.1-201ENST00000427475 662 ntBASIC20.73■□□□□ 0.91
VCPP55072 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC20.73■□□□□ 0.91
VCPP55072 AC132938.3-201ENST00000579095 357 ntTSL 2 BASIC20.73■□□□□ 0.91
VCPP55072 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.91
VCPP55072 AL358472.4-201ENST00000633140 710 ntBASIC20.73■□□□□ 0.91
VCPP55072 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC20.73■□□□□ 0.91
VCPP55072 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
VCPP55072 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC20.73■□□□□ 0.91
VCPP55072 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC20.73■□□□□ 0.91
VCPP55072 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
VCPP55072 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC20.73■□□□□ 0.91
VCPP55072 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
VCPP55072 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC20.72■□□□□ 0.91
VCPP55072 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC20.72■□□□□ 0.91
VCPP55072 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
VCPP55072 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
VCPP55072 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC20.72■□□□□ 0.91
VCPP55072 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
VCPP55072 PTBP1P-201ENST00000554374 1601 ntBASIC20.72■□□□□ 0.91
VCPP55072 TYMSOS-201ENST00000323813 844 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
VCPP55072 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
VCPP55072 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
VCPP55072 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC20.72■□□□□ 0.91
VCPP55072 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC20.72■□□□□ 0.91
VCPP55072 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC20.72■□□□□ 0.91
VCPP55072 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC20.72■□□□□ 0.91
VCPP55072 AC073195.1-201ENST00000607241 877 ntBASIC20.72■□□□□ 0.91
VCPP55072 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC20.72■□□□□ 0.91
VCPP55072 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
VCPP55072 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC20.72■□□□□ 0.91
VCPP55072 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC20.72■□□□□ 0.91
VCPP55072 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
VCPP55072 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
VCPP55072 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC20.72■□□□□ 0.91
VCPP55072 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC20.72■□□□□ 0.91
VCPP55072 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC20.71■□□□□ 0.91
VCPP55072 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC20.71■□□□□ 0.91
VCPP55072 AL158211.5-201ENST00000623583 2518 ntBASIC20.71■□□□□ 0.91
VCPP55072 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
VCPP55072 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC20.71■□□□□ 0.91
VCPP55072 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
VCPP55072 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC20.71■□□□□ 0.91
VCPP55072 FDX2-207ENST00000494368 584 ntTSL 4 BASIC20.71■□□□□ 0.91
VCPP55072 KRT18P56-201ENST00000507275 550 ntBASIC20.71■□□□□ 0.91
VCPP55072 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC20.71■□□□□ 0.91
VCPP55072 AC023632.3-201ENST00000521633 145 ntBASIC20.71■□□□□ 0.91
VCPP55072 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC20.71■□□□□ 0.91
VCPP55072 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC20.71■□□□□ 0.91
VCPP55072 AC006011.2-201ENST00000621313 1158 ntBASIC20.71■□□□□ 0.91
VCPP55072 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
VCPP55072 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC20.71■□□□□ 0.91
VCPP55072 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC20.71■□□□□ 0.91
VCPP55072 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
VCPP55072 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
VCPP55072 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
VCPP55072 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC20.71■□□□□ 0.91
VCPP55072 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC20.71■□□□□ 0.91
VCPP55072 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC20.7■□□□□ 0.91
VCPP55072 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
VCPP55072 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC20.7■□□□□ 0.9
VCPP55072 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
VCPP55072 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC20.7■□□□□ 0.9
VCPP55072 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
VCPP55072 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
VCPP55072 GUCA1B-201ENST00000230361 1113 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
VCPP55072 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 17.8 ms