Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 AC027796.2-201ENST00000575326 344 ntBASIC22.5■■□□□ 1.19
CTCFP49711 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC22.5■■□□□ 1.19
CTCFP49711 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC22.5■■□□□ 1.19
CTCFP49711 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC22.5■■□□□ 1.19
CTCFP49711 MAGI2-201ENST00000354212 6880 ntAPPRIS P3 TSL 1 (best) BASIC22.5■■□□□ 1.19
CTCFP49711 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC22.49■■□□□ 1.19
CTCFP49711 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC22.49■■□□□ 1.19
CTCFP49711 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
CTCFP49711 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
CTCFP49711 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC22.49■■□□□ 1.19
CTCFP49711 PGLS-201ENST00000252603 1028 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
CTCFP49711 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
CTCFP49711 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
CTCFP49711 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
CTCFP49711 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC22.49■■□□□ 1.19
CTCFP49711 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC22.49■■□□□ 1.19
CTCFP49711 COX10-202ENST00000429152 875 ntTSL 2 BASIC22.49■■□□□ 1.19
CTCFP49711 RABL2B-209ENST00000435118 1126 ntAPPRIS P3 TSL 1 (best) BASIC22.49■■□□□ 1.19
CTCFP49711 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC22.49■■□□□ 1.19
CTCFP49711 AC244107.1-201ENST00000442033 332 ntBASIC22.49■■□□□ 1.19
CTCFP49711 ENO1-AS1-201ENST00000442636 456 ntTSL 2 BASIC22.49■■□□□ 1.19
CTCFP49711 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC22.49■■□□□ 1.19
CTCFP49711 MPI-205ENST00000562606 1052 ntTSL 3 BASIC22.49■■□□□ 1.19
CTCFP49711 TMIGD2-202ENST00000595645 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC22.49■■□□□ 1.19
CTCFP49711 AL691403.2-201ENST00000618460 490 ntBASIC22.49■■□□□ 1.19
CTCFP49711 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC22.49■■□□□ 1.19
CTCFP49711 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC22.49■■□□□ 1.19
CTCFP49711 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC22.49■■□□□ 1.19
CTCFP49711 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC22.49■■□□□ 1.19
CTCFP49711 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC22.48■■□□□ 1.19
CTCFP49711 KRT8P36-201ENST00000489121 1440 ntBASIC22.48■■□□□ 1.19
CTCFP49711 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC22.48■■□□□ 1.19
CTCFP49711 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
CTCFP49711 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
CTCFP49711 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC22.48■■□□□ 1.19
CTCFP49711 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC22.48■■□□□ 1.19
CTCFP49711 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
CTCFP49711 BID-212ENST00000614949 1988 ntTSL 5 BASIC22.48■■□□□ 1.19
CTCFP49711 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
CTCFP49711 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC22.48■■□□□ 1.19
CTCFP49711 PMS2P7-201ENST00000506558 1336 ntBASIC22.48■■□□□ 1.19
CTCFP49711 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
CTCFP49711 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC22.48■■□□□ 1.19
CTCFP49711 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
CTCFP49711 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
CTCFP49711 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC22.48■■□□□ 1.19
CTCFP49711 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC22.47■■□□□ 1.19
CTCFP49711 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC22.47■■□□□ 1.19
CTCFP49711 KLK12-201ENST00000250351 882 ntAPPRIS P4 TSL 5 BASIC22.47■■□□□ 1.19
CTCFP49711 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC22.47■■□□□ 1.19
CTCFP49711 CNPY2-201ENST00000273308 1214 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
CTCFP49711 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
CTCFP49711 MIR564-202ENST00000385049 94 ntBASIC22.47■■□□□ 1.19
CTCFP49711 ING5-202ENST00000406941 946 ntAPPRIS ALT1 TSL 1 (best) BASIC22.47■■□□□ 1.19
CTCFP49711 NSUN5P1-208ENST00000473960 500 ntTSL 3 BASIC22.47■■□□□ 1.19
CTCFP49711 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC22.47■■□□□ 1.19
CTCFP49711 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC22.47■■□□□ 1.19
CTCFP49711 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC22.47■■□□□ 1.19
CTCFP49711 HLA-A-209ENST00000638375 975 ntBASIC22.47■■□□□ 1.19
CTCFP49711 SHBG-201ENST00000340624 1311 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
CTCFP49711 CBWD2-204ENST00000433343 1411 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
CTCFP49711 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
CTCFP49711 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
CTCFP49711 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
CTCFP49711 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC22.46■■□□□ 1.19
CTCFP49711 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC22.46■■□□□ 1.19
CTCFP49711 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC22.46■■□□□ 1.19
CTCFP49711 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC22.46■■□□□ 1.19
CTCFP49711 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
CTCFP49711 GNB1L-203ENST00000405009 1076 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
CTCFP49711 C7orf34-201ENST00000409607 766 ntAPPRIS P2 TSL 1 (best) BASIC22.46■■□□□ 1.19
CTCFP49711 DERL1-203ENST00000419562 918 ntTSL 2 BASIC22.46■■□□□ 1.19
CTCFP49711 CHCHD2P8-201ENST00000429873 447 ntBASIC22.46■■□□□ 1.19
CTCFP49711 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
CTCFP49711 POLD2P1-201ENST00000511220 997 ntBASIC22.46■■□□□ 1.19
CTCFP49711 AP000867.3-201ENST00000524675 377 ntBASIC22.46■■□□□ 1.19
CTCFP49711 SLC25A1P1-201ENST00000528351 927 ntBASIC22.46■■□□□ 1.19
CTCFP49711 KRT8P26-201ENST00000534154 1276 ntBASIC22.46■■□□□ 1.19
CTCFP49711 AC140113.2-201ENST00000604370 208 ntBASIC22.46■■□□□ 1.19
CTCFP49711 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC22.46■■□□□ 1.19
CTCFP49711 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC22.46■■□□□ 1.19
CTCFP49711 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC22.46■■□□□ 1.19
CTCFP49711 KRT8P20-201ENST00000423953 1409 ntBASIC22.46■■□□□ 1.19
CTCFP49711 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC22.46■■□□□ 1.19
CTCFP49711 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC22.46■■□□□ 1.19
CTCFP49711 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
CTCFP49711 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC22.45■■□□□ 1.19
CTCFP49711 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC22.45■■□□□ 1.18
CTCFP49711 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC22.45■■□□□ 1.18
CTCFP49711 FBXW4P1-201ENST00000426721 2239 ntBASIC22.45■■□□□ 1.18
CTCFP49711 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC22.45■■□□□ 1.18
CTCFP49711 OLFM1-207ENST00000371801 568 ntTSL 2 BASIC22.45■■□□□ 1.18
CTCFP49711 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC22.45■■□□□ 1.18
CTCFP49711 KRT16P4-201ENST00000453883 522 ntBASIC22.45■■□□□ 1.18
CTCFP49711 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC22.45■■□□□ 1.18
CTCFP49711 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC22.45■■□□□ 1.18
CTCFP49711 AC064862.7-201ENST00000604520 867 ntBASIC22.45■■□□□ 1.18
CTCFP49711 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC22.45■■□□□ 1.18
CTCFP49711 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
CTCFP49711 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
Retrieved 100 of 98,524 protein–RNA pairs in 20.5 ms