Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
CDX1P47902 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC15.76■□□□□ 0.11
CDX1P47902 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
CDX1P47902 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC15.76■□□□□ 0.11
CDX1P47902 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
CDX1P47902 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
CDX1P47902 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC15.76■□□□□ 0.11
CDX1P47902 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
CDX1P47902 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC15.76■□□□□ 0.11
CDX1P47902 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC15.76■□□□□ 0.11
CDX1P47902 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC15.76■□□□□ 0.11
CDX1P47902 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC15.76■□□□□ 0.11
CDX1P47902 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC15.76■□□□□ 0.11
CDX1P47902 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC15.76■□□□□ 0.11
CDX1P47902 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
CDX1P47902 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
CDX1P47902 ESRRAP1-201ENST00000400596 1257 ntBASIC15.76■□□□□ 0.11
CDX1P47902 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC15.76■□□□□ 0.11
CDX1P47902 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC15.76■□□□□ 0.11
CDX1P47902 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC15.76■□□□□ 0.11
CDX1P47902 OCIAD2-205ENST00000508632 1163 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
CDX1P47902 ITM2C-210ENST00000620962 501 ntBASIC15.76■□□□□ 0.11
CDX1P47902 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC15.76■□□□□ 0.11
CDX1P47902 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC15.76■□□□□ 0.11
CDX1P47902 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
CDX1P47902 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
CDX1P47902 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC15.76■□□□□ 0.11
CDX1P47902 AC106820.2-201ENST00000563775 3264 ntBASIC15.76■□□□□ 0.11
CDX1P47902 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
CDX1P47902 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
CDX1P47902 AC092368.3-202ENST00000574180 1591 ntBASIC15.75■□□□□ 0.11
CDX1P47902 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
CDX1P47902 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
CDX1P47902 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC15.75■□□□□ 0.11
CDX1P47902 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
CDX1P47902 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC15.75■□□□□ 0.11
CDX1P47902 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC15.75■□□□□ 0.11
CDX1P47902 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
CDX1P47902 C10orf76-201ENST00000311122 724 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
CDX1P47902 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
CDX1P47902 CEACAM3-201ENST00000344550 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC15.75■□□□□ 0.11
CDX1P47902 SPATA25-201ENST00000372519 757 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
CDX1P47902 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
CDX1P47902 AC004882.1-201ENST00000416352 590 ntTSL 3 BASIC15.75■□□□□ 0.11
CDX1P47902 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC15.75■□□□□ 0.11
CDX1P47902 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC15.75■□□□□ 0.11
CDX1P47902 ADM-205ENST00000528544 586 ntTSL 2 BASIC15.75■□□□□ 0.11
CDX1P47902 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
CDX1P47902 PNMA6B-201ENST00000538162 1200 ntBASIC15.75■□□□□ 0.11
CDX1P47902 MMAB-206ENST00000540016 945 ntTSL 3 BASIC15.75■□□□□ 0.11
CDX1P47902 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC15.75■□□□□ 0.11
CDX1P47902 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
CDX1P47902 MIR2861-201ENST00000636310 90 ntBASIC15.75■□□□□ 0.11
CDX1P47902 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC15.75■□□□□ 0.11
CDX1P47902 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC15.75■□□□□ 0.11
CDX1P47902 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
CDX1P47902 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC15.75■□□□□ 0.11
CDX1P47902 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC15.75■□□□□ 0.11
CDX1P47902 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC15.75■□□□□ 0.11
CDX1P47902 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC15.75■□□□□ 0.11
CDX1P47902 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC15.75■□□□□ 0.11
CDX1P47902 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
CDX1P47902 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
CDX1P47902 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
CDX1P47902 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC15.75■□□□□ 0.11
CDX1P47902 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC15.75■□□□□ 0.11
CDX1P47902 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
CDX1P47902 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
CDX1P47902 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC15.75■□□□□ 0.11
CDX1P47902 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC15.74■□□□□ 0.11
CDX1P47902 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC15.74■□□□□ 0.11
CDX1P47902 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC15.74■□□□□ 0.11
CDX1P47902 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC15.74■□□□□ 0.11
CDX1P47902 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
CDX1P47902 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC15.74■□□□□ 0.11
CDX1P47902 MRAP-201ENST00000303645 935 ntAPPRIS P4 TSL 1 (best) BASIC15.74■□□□□ 0.11
CDX1P47902 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
CDX1P47902 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC15.74■□□□□ 0.11
CDX1P47902 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC15.74■□□□□ 0.11
CDX1P47902 KRT18P29-201ENST00000397031 1267 ntBASIC15.74■□□□□ 0.11
CDX1P47902 AC007285.1-201ENST00000422239 893 ntTSL 5 BASIC15.74■□□□□ 0.11
CDX1P47902 AC026366.1-201ENST00000488803 879 ntBASIC15.74■□□□□ 0.11
CDX1P47902 AP003097.1-201ENST00000530657 1135 ntBASIC15.74■□□□□ 0.11
CDX1P47902 IRX5-204ENST00000560154 879 ntTSL 5 BASIC15.74■□□□□ 0.11
CDX1P47902 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC15.74■□□□□ 0.11
CDX1P47902 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
CDX1P47902 IRX5-205ENST00000620085 881 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
CDX1P47902 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC15.74■□□□□ 0.11
CDX1P47902 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
CDX1P47902 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
CDX1P47902 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC15.74■□□□□ 0.11
CDX1P47902 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
CDX1P47902 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
CDX1P47902 CLUH-201ENST00000435359 5224 ntAPPRIS P2 TSL 5 BASIC15.74■□□□□ 0.11
CDX1P47902 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC15.74■□□□□ 0.11
CDX1P47902 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
CDX1P47902 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
CDX1P47902 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
CDX1P47902 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC15.73■□□□□ 0.11
CDX1P47902 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 25.9 ms