Protein–RNA interactions for Protein: P43681

CHRNA4, Neuronal acetylcholine receptor subunit alpha-4, humanhuman

Predictions only

Length 627 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHRNA4P43681 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CHRNA4P43681 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC19.56■□□□□ 0.72
CHRNA4P43681 AC133681.1-201ENST00000465482 601 ntBASIC19.56■□□□□ 0.72
CHRNA4P43681 RPPH1-201ENST00000516869 333 ntBASIC19.56■□□□□ 0.72
CHRNA4P43681 LINC01301-204ENST00000530725 577 ntTSL 4 BASIC19.56■□□□□ 0.72
CHRNA4P43681 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC19.56■□□□□ 0.72
CHRNA4P43681 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CHRNA4P43681 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC19.56■□□□□ 0.72
CHRNA4P43681 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC19.56■□□□□ 0.72
CHRNA4P43681 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC19.56■□□□□ 0.72
CHRNA4P43681 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CHRNA4P43681 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
CHRNA4P43681 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC19.56■□□□□ 0.72
CHRNA4P43681 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC19.56■□□□□ 0.72
CHRNA4P43681 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC19.55■□□□□ 0.72
CHRNA4P43681 PTGES2-AS1-201ENST00000443493 2100 ntBASIC19.55■□□□□ 0.72
CHRNA4P43681 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC19.55■□□□□ 0.72
CHRNA4P43681 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CHRNA4P43681 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC19.55■□□□□ 0.72
CHRNA4P43681 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC19.55■□□□□ 0.72
CHRNA4P43681 ABHD17AP1-201ENST00000358206 933 ntBASIC19.55■□□□□ 0.72
CHRNA4P43681 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC19.55■□□□□ 0.72
CHRNA4P43681 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC19.55■□□□□ 0.72
CHRNA4P43681 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CHRNA4P43681 TK2-204ENST00000525974 1178 ntTSL 2 BASIC19.55■□□□□ 0.72
CHRNA4P43681 C1QL1P1-201ENST00000568105 661 ntBASIC19.55■□□□□ 0.72
CHRNA4P43681 AC004264.1-201ENST00000608354 794 ntBASIC19.55■□□□□ 0.72
CHRNA4P43681 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CHRNA4P43681 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
CHRNA4P43681 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CHRNA4P43681 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CHRNA4P43681 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CHRNA4P43681 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC19.54■□□□□ 0.72
CHRNA4P43681 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
CHRNA4P43681 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC19.54■□□□□ 0.72
CHRNA4P43681 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC19.54■□□□□ 0.72
CHRNA4P43681 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
CHRNA4P43681 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
CHRNA4P43681 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC19.54■□□□□ 0.72
CHRNA4P43681 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
CHRNA4P43681 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
CHRNA4P43681 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
CHRNA4P43681 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
CHRNA4P43681 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC19.54■□□□□ 0.72
CHRNA4P43681 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC19.54■□□□□ 0.72
CHRNA4P43681 C19orf25-213ENST00000592872 1287 ntAPPRIS P1 TSL 2 BASIC19.54■□□□□ 0.72
CHRNA4P43681 AC110285.5-201ENST00000611501 352 ntBASIC19.54■□□□□ 0.72
CHRNA4P43681 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC19.54■□□□□ 0.72
CHRNA4P43681 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC19.54■□□□□ 0.72
CHRNA4P43681 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC19.54■□□□□ 0.72
CHRNA4P43681 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
CHRNA4P43681 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC19.54■□□□□ 0.72
CHRNA4P43681 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
CHRNA4P43681 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
CHRNA4P43681 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC19.54■□□□□ 0.72
CHRNA4P43681 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
CHRNA4P43681 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
CHRNA4P43681 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC19.53■□□□□ 0.72
CHRNA4P43681 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
CHRNA4P43681 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC19.53■□□□□ 0.72
CHRNA4P43681 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC19.53■□□□□ 0.72
CHRNA4P43681 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC19.53■□□□□ 0.72
CHRNA4P43681 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CHRNA4P43681 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
CHRNA4P43681 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC19.53■□□□□ 0.72
CHRNA4P43681 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
CHRNA4P43681 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC19.53■□□□□ 0.72
CHRNA4P43681 A3GALT2-201ENST00000442999 1023 ntAPPRIS P1 TSL 5 BASIC19.53■□□□□ 0.72
CHRNA4P43681 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC19.53■□□□□ 0.72
CHRNA4P43681 KRT16P5-201ENST00000455284 522 ntBASIC19.53■□□□□ 0.72
CHRNA4P43681 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC19.53■□□□□ 0.72
CHRNA4P43681 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC19.53■□□□□ 0.72
CHRNA4P43681 IRX5-204ENST00000560154 879 ntTSL 5 BASIC19.53■□□□□ 0.72
CHRNA4P43681 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC19.53■□□□□ 0.72
CHRNA4P43681 IRX5-205ENST00000620085 881 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
CHRNA4P43681 AL359736.2-201ENST00000621992 437 ntBASIC19.53■□□□□ 0.72
CHRNA4P43681 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC19.53■□□□□ 0.72
CHRNA4P43681 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
CHRNA4P43681 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CHRNA4P43681 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
CHRNA4P43681 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC19.53■□□□□ 0.72
CHRNA4P43681 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CHRNA4P43681 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CHRNA4P43681 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC19.53■□□□□ 0.72
CHRNA4P43681 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC19.53■□□□□ 0.72
CHRNA4P43681 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC19.53■□□□□ 0.72
CHRNA4P43681 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC19.53■□□□□ 0.72
CHRNA4P43681 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC19.53■□□□□ 0.72
CHRNA4P43681 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC19.52■□□□□ 0.72
CHRNA4P43681 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC19.52■□□□□ 0.72
CHRNA4P43681 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
CHRNA4P43681 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
CHRNA4P43681 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC19.52■□□□□ 0.72
CHRNA4P43681 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC19.52■□□□□ 0.72
CHRNA4P43681 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC19.52■□□□□ 0.72
CHRNA4P43681 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC19.52■□□□□ 0.72
CHRNA4P43681 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
CHRNA4P43681 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC19.52■□□□□ 0.72
CHRNA4P43681 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC19.52■□□□□ 0.72
CHRNA4P43681 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC19.52■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 27 ms