Protein–RNA interactions for Protein: P42858

HTT, Huntingtin, humanhuman

Predictions only

Length 3,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HTTP42858 RPL36-202ENST00000394580 556 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
HTTP42858 UBXN1-210ENST00000529640 1110 ntAPPRIS ALT1 TSL 5 BASIC21.87■■□□□ 1.09
HTTP42858 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC21.87■■□□□ 1.09
HTTP42858 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC21.87■■□□□ 1.09
HTTP42858 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
HTTP42858 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC21.87■■□□□ 1.09
HTTP42858 RBPMS-203ENST00000339877 1341 ntAPPRIS ALT1 TSL 1 (best) BASIC21.87■■□□□ 1.09
HTTP42858 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
HTTP42858 C1QL3-201ENST00000298943 2493 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
HTTP42858 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
HTTP42858 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
HTTP42858 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
HTTP42858 NUS1P1-201ENST00000446295 882 ntBASIC21.86■■□□□ 1.09
HTTP42858 TSSC2-201ENST00000450217 709 ntBASIC21.86■■□□□ 1.09
HTTP42858 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC21.86■■□□□ 1.09
HTTP42858 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC21.86■■□□□ 1.09
HTTP42858 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC21.86■■□□□ 1.09
HTTP42858 HOTTIP_1.1-201ENST00000620415 57 ntBASIC21.86■■□□□ 1.09
HTTP42858 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC21.86■■□□□ 1.09
HTTP42858 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC21.86■■□□□ 1.09
HTTP42858 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC21.86■■□□□ 1.09
HTTP42858 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC21.86■■□□□ 1.09
HTTP42858 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC21.86■■□□□ 1.09
HTTP42858 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
HTTP42858 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC21.86■■□□□ 1.09
HTTP42858 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC21.86■■□□□ 1.09
HTTP42858 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
HTTP42858 PHGDH-210ENST00000641115 1638 ntBASIC21.86■■□□□ 1.09
HTTP42858 MOSPD3-201ENST00000223054 1053 ntAPPRIS P1 TSL 2 BASIC21.86■■□□□ 1.09
HTTP42858 HINT1-201ENST00000304043 1081 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
HTTP42858 AC069368.1-202ENST00000437723 750 ntAPPRIS P1 TSL 5 BASIC21.86■■□□□ 1.09
HTTP42858 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
HTTP42858 AL121672.3-201ENST00000608644 468 ntBASIC21.86■■□□□ 1.09
HTTP42858 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC21.86■■□□□ 1.09
HTTP42858 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC21.86■■□□□ 1.09
HTTP42858 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC21.86■■□□□ 1.09
HTTP42858 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC21.86■■□□□ 1.09
HTTP42858 MIR574-201ENST00000385209 96 ntBASIC21.86■■□□□ 1.09
HTTP42858 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC21.86■■□□□ 1.09
HTTP42858 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC21.86■■□□□ 1.09
HTTP42858 AC012615.1-201ENST00000565797 1299 ntBASIC21.86■■□□□ 1.09
HTTP42858 SMG8-203ENST00000578922 2178 ntBASIC21.86■■□□□ 1.09
HTTP42858 DPP3P2-201ENST00000416030 1696 ntBASIC21.85■■□□□ 1.09
HTTP42858 LINC01770-202ENST00000430109 510 ntTSL 3 BASIC21.85■■□□□ 1.09
HTTP42858 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC21.85■■□□□ 1.09
HTTP42858 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC21.85■■□□□ 1.09
HTTP42858 BMP2K-204ENST00000502871 3195 ntAPPRIS P3 TSL 1 (best) BASIC21.85■■□□□ 1.09
HTTP42858 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC21.85■■□□□ 1.09
HTTP42858 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC21.85■■□□□ 1.09
HTTP42858 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
HTTP42858 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
HTTP42858 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC21.85■■□□□ 1.09
HTTP42858 TRA2B-202ENST00000342294 288 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
HTTP42858 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
HTTP42858 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
HTTP42858 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC21.85■■□□□ 1.09
HTTP42858 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC21.85■■□□□ 1.09
HTTP42858 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC21.85■■□□□ 1.09
HTTP42858 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
HTTP42858 TMEM150C-201ENST00000449862 1990 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
HTTP42858 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
HTTP42858 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
HTTP42858 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC21.84■■□□□ 1.09
HTTP42858 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC21.84■■□□□ 1.09
HTTP42858 PREB-201ENST00000260643 2166 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
HTTP42858 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC21.84■■□□□ 1.09
HTTP42858 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC21.84■■□□□ 1.09
HTTP42858 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC21.84■■□□□ 1.09
HTTP42858 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC21.84■■□□□ 1.09
HTTP42858 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
HTTP42858 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC21.84■■□□□ 1.09
HTTP42858 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC21.84■■□□□ 1.09
HTTP42858 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC21.84■■□□□ 1.09
HTTP42858 AC244015.2-201ENST00000616358 1861 ntBASIC21.84■■□□□ 1.09
HTTP42858 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
HTTP42858 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC21.84■■□□□ 1.09
HTTP42858 C2orf82-202ENST00000409230 663 ntAPPRIS P2 TSL 3 BASIC21.84■■□□□ 1.09
HTTP42858 ZFAND2B-207ENST00000409412 569 ntTSL 2 BASIC21.84■■□□□ 1.09
HTTP42858 PENK-208ENST00000523051 772 ntTSL 5 BASIC21.84■■□□□ 1.09
HTTP42858 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC21.84■■□□□ 1.09
HTTP42858 PCSK6-216ENST00000615296 2921 ntTSL 5 BASIC21.84■■□□□ 1.09
HTTP42858 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC21.84■■□□□ 1.09
HTTP42858 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
HTTP42858 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
HTTP42858 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC21.83■■□□□ 1.09
HTTP42858 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
HTTP42858 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
HTTP42858 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC21.83■■□□□ 1.09
HTTP42858 RASA4DP-201ENST00000460726 1199 ntBASIC21.83■■□□□ 1.09
HTTP42858 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC21.83■■□□□ 1.09
HTTP42858 SLC30A2-201ENST00000374276 2494 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
HTTP42858 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
HTTP42858 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC21.83■■□□□ 1.09
HTTP42858 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC21.83■■□□□ 1.08
HTTP42858 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
HTTP42858 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC21.83■■□□□ 1.08
HTTP42858 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
HTTP42858 OSR2-201ENST00000297565 1838 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
HTTP42858 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC21.83■■□□□ 1.08
HTTP42858 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC21.83■■□□□ 1.08
Retrieved 100 of 98,524 protein–RNA pairs in 19.4 ms