Protein–RNA interactions for Protein: P31270

HOXA11, Homeobox protein Hox-A11, humanhuman

Predicted RBP Predictions only

Length 313 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA11P31270 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC21.01■□□□□ 0.95
HOXA11P31270 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
HOXA11P31270 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC21.01■□□□□ 0.95
HOXA11P31270 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC21.01■□□□□ 0.95
HOXA11P31270 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
HOXA11P31270 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
HOXA11P31270 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
HOXA11P31270 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC21.01■□□□□ 0.95
HOXA11P31270 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
HOXA11P31270 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC21.01■□□□□ 0.95
HOXA11P31270 NDUFS3-213ENST00000534716 1263 ntTSL 2 BASIC21.01■□□□□ 0.95
HOXA11P31270 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
HOXA11P31270 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC21.01■□□□□ 0.95
HOXA11P31270 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC21.01■□□□□ 0.95
HOXA11P31270 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
HOXA11P31270 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
HOXA11P31270 AC092338.2-201ENST00000568827 1415 ntBASIC21.01■□□□□ 0.95
HOXA11P31270 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
HOXA11P31270 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
HOXA11P31270 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
HOXA11P31270 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
HOXA11P31270 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC21.01■□□□□ 0.95
HOXA11P31270 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC21.01■□□□□ 0.95
HOXA11P31270 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC21.01■□□□□ 0.95
HOXA11P31270 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
HOXA11P31270 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC21.01■□□□□ 0.95
HOXA11P31270 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC21■□□□□ 0.95
HOXA11P31270 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC21■□□□□ 0.95
HOXA11P31270 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
HOXA11P31270 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC21■□□□□ 0.95
HOXA11P31270 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
HOXA11P31270 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC21■□□□□ 0.95
HOXA11P31270 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC21■□□□□ 0.95
HOXA11P31270 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC21■□□□□ 0.95
HOXA11P31270 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC21■□□□□ 0.95
HOXA11P31270 AC128688.1-201ENST00000487626 519 ntBASIC21■□□□□ 0.95
HOXA11P31270 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC21■□□□□ 0.95
HOXA11P31270 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC21■□□□□ 0.95
HOXA11P31270 AC116562.4-202ENST00000641738 218 ntBASIC21■□□□□ 0.95
HOXA11P31270 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC21■□□□□ 0.95
HOXA11P31270 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC21■□□□□ 0.95
HOXA11P31270 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
HOXA11P31270 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
HOXA11P31270 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC21■□□□□ 0.95
HOXA11P31270 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
HOXA11P31270 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
HOXA11P31270 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC20.99■□□□□ 0.95
HOXA11P31270 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC20.99■□□□□ 0.95
HOXA11P31270 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
HOXA11P31270 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
HOXA11P31270 ZNF815P-204ENST00000434898 1737 ntBASIC20.99■□□□□ 0.95
HOXA11P31270 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
HOXA11P31270 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC20.99■□□□□ 0.95
HOXA11P31270 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
HOXA11P31270 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
HOXA11P31270 KRT8P11-201ENST00000409686 1436 ntBASIC20.99■□□□□ 0.95
HOXA11P31270 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC20.99■□□□□ 0.95
HOXA11P31270 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
HOXA11P31270 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC20.99■□□□□ 0.95
HOXA11P31270 AC007663.1-201ENST00000438948 1240 ntBASIC20.99■□□□□ 0.95
HOXA11P31270 AC104076.2-201ENST00000448912 469 ntBASIC20.99■□□□□ 0.95
HOXA11P31270 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC20.99■□□□□ 0.95
HOXA11P31270 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
HOXA11P31270 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC20.99■□□□□ 0.95
HOXA11P31270 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
HOXA11P31270 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
HOXA11P31270 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
HOXA11P31270 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
HOXA11P31270 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC20.99■□□□□ 0.95
HOXA11P31270 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
HOXA11P31270 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC20.98■□□□□ 0.95
HOXA11P31270 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC20.98■□□□□ 0.95
HOXA11P31270 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
HOXA11P31270 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC20.98■□□□□ 0.95
HOXA11P31270 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC20.98■□□□□ 0.95
HOXA11P31270 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC20.98■□□□□ 0.95
HOXA11P31270 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC20.98■□□□□ 0.95
HOXA11P31270 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
HOXA11P31270 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC20.98■□□□□ 0.95
HOXA11P31270 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC20.98■□□□□ 0.95
HOXA11P31270 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC20.98■□□□□ 0.95
HOXA11P31270 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC20.98■□□□□ 0.95
HOXA11P31270 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC20.98■□□□□ 0.95
HOXA11P31270 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC20.98■□□□□ 0.95
HOXA11P31270 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
HOXA11P31270 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
HOXA11P31270 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC20.98■□□□□ 0.95
HOXA11P31270 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
HOXA11P31270 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC20.98■□□□□ 0.95
HOXA11P31270 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC20.98■□□□□ 0.95
HOXA11P31270 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC20.98■□□□□ 0.95
HOXA11P31270 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
HOXA11P31270 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC20.98■□□□□ 0.95
HOXA11P31270 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
HOXA11P31270 MAGI2-217ENST00000629359 6704 ntTSL 5 BASIC20.98■□□□□ 0.95
HOXA11P31270 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
HOXA11P31270 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
HOXA11P31270 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC20.97■□□□□ 0.95
HOXA11P31270 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
HOXA11P31270 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC20.97■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 37.1 ms