Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
MSX1P28360 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
MSX1P28360 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
MSX1P28360 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
MSX1P28360 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC17.78■□□□□ 0.44
MSX1P28360 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC17.77■□□□□ 0.44
MSX1P28360 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC17.77■□□□□ 0.44
MSX1P28360 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
MSX1P28360 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
MSX1P28360 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
MSX1P28360 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC17.77■□□□□ 0.44
MSX1P28360 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC17.77■□□□□ 0.44
MSX1P28360 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC17.77■□□□□ 0.44
MSX1P28360 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
MSX1P28360 ZDHHC2-201ENST00000262096 6377 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
MSX1P28360 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
MSX1P28360 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC17.77■□□□□ 0.44
MSX1P28360 C1QBP-201ENST00000225698 1169 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
MSX1P28360 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
MSX1P28360 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
MSX1P28360 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC17.77■□□□□ 0.44
MSX1P28360 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC17.77■□□□□ 0.44
MSX1P28360 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC17.77■□□□□ 0.44
MSX1P28360 TSPY15P-201ENST00000457163 923 ntBASIC17.77■□□□□ 0.44
MSX1P28360 PENK-204ENST00000518770 863 ntTSL 2 BASIC17.77■□□□□ 0.44
MSX1P28360 AL355075.4-201ENST00000554988 638 ntBASIC17.77■□□□□ 0.44
MSX1P28360 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC17.77■□□□□ 0.44
MSX1P28360 AC097493.4-201ENST00000641197 219 ntBASIC17.77■□□□□ 0.44
MSX1P28360 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC17.77■□□□□ 0.44
MSX1P28360 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.43
MSX1P28360 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC17.77■□□□□ 0.43
MSX1P28360 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
MSX1P28360 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC17.77■□□□□ 0.43
MSX1P28360 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
MSX1P28360 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
MSX1P28360 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC17.76■□□□□ 0.43
MSX1P28360 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
MSX1P28360 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC17.76■□□□□ 0.43
MSX1P28360 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC17.76■□□□□ 0.43
MSX1P28360 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC17.76■□□□□ 0.43
MSX1P28360 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC17.76■□□□□ 0.43
MSX1P28360 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
MSX1P28360 KAZN-208ENST00000636203 6874 ntTSL 5 BASIC17.76■□□□□ 0.43
MSX1P28360 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
MSX1P28360 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
MSX1P28360 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC17.76■□□□□ 0.43
MSX1P28360 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
MSX1P28360 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
MSX1P28360 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
MSX1P28360 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC17.76■□□□□ 0.43
MSX1P28360 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC17.76■□□□□ 0.43
MSX1P28360 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC17.76■□□□□ 0.43
MSX1P28360 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC17.76■□□□□ 0.43
MSX1P28360 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
MSX1P28360 AC012306.2-201ENST00000609350 630 ntBASIC17.76■□□□□ 0.43
MSX1P28360 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC17.76■□□□□ 0.43
MSX1P28360 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC17.76■□□□□ 0.43
MSX1P28360 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
MSX1P28360 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
MSX1P28360 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
MSX1P28360 PCDHAC2-203ENST00000615316 3011 ntBASIC17.75■□□□□ 0.43
MSX1P28360 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
MSX1P28360 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
MSX1P28360 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
MSX1P28360 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
MSX1P28360 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC17.75■□□□□ 0.43
MSX1P28360 AC008105.2-201ENST00000420431 579 ntTSL 4 BASIC17.75■□□□□ 0.43
MSX1P28360 AL353807.1-201ENST00000427475 662 ntBASIC17.75■□□□□ 0.43
MSX1P28360 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC17.75■□□□□ 0.43
MSX1P28360 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC17.75■□□□□ 0.43
MSX1P28360 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
MSX1P28360 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
MSX1P28360 C1QL1P1-201ENST00000568105 661 ntBASIC17.75■□□□□ 0.43
MSX1P28360 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC17.75■□□□□ 0.43
MSX1P28360 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC17.75■□□□□ 0.43
MSX1P28360 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
MSX1P28360 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC17.75■□□□□ 0.43
MSX1P28360 TREX1-205ENST00000625293 1783 ntBASIC17.75■□□□□ 0.43
MSX1P28360 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC17.75■□□□□ 0.43
MSX1P28360 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC17.75■□□□□ 0.43
MSX1P28360 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC17.75■□□□□ 0.43
MSX1P28360 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC17.75■□□□□ 0.43
MSX1P28360 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
MSX1P28360 C19orf66-209ENST00000591813 1481 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
MSX1P28360 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC17.75■□□□□ 0.43
MSX1P28360 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
MSX1P28360 AMACR-206ENST00000502637 1598 ntTSL 5 BASIC17.74■□□□□ 0.43
MSX1P28360 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
MSX1P28360 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
MSX1P28360 FAM117B-201ENST00000392238 5763 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
MSX1P28360 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
MSX1P28360 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
MSX1P28360 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC17.74■□□□□ 0.43
MSX1P28360 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
MSX1P28360 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC17.74■□□□□ 0.43
MSX1P28360 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC17.74■□□□□ 0.43
MSX1P28360 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
MSX1P28360 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC17.74■□□□□ 0.43
MSX1P28360 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC17.74■□□□□ 0.43
MSX1P28360 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC17.74■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 34.6 ms