Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
BDNFP23560 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC20.47■□□□□ 0.87
BDNFP23560 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC20.47■□□□□ 0.87
BDNFP23560 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
BDNFP23560 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
BDNFP23560 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC20.47■□□□□ 0.87
BDNFP23560 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC20.47■□□□□ 0.87
BDNFP23560 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC20.47■□□□□ 0.87
BDNFP23560 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC20.47■□□□□ 0.87
BDNFP23560 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC20.47■□□□□ 0.87
BDNFP23560 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC20.47■□□□□ 0.87
BDNFP23560 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
BDNFP23560 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
BDNFP23560 CAMKV-205ENST00000467248 1688 ntTSL 2 BASIC20.47■□□□□ 0.87
BDNFP23560 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
BDNFP23560 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
BDNFP23560 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
BDNFP23560 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC20.47■□□□□ 0.87
BDNFP23560 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
BDNFP23560 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
BDNFP23560 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC20.47■□□□□ 0.87
BDNFP23560 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
BDNFP23560 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC20.46■□□□□ 0.87
BDNFP23560 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC20.46■□□□□ 0.87
BDNFP23560 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
BDNFP23560 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC20.46■□□□□ 0.87
BDNFP23560 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
BDNFP23560 AC004951.3-201ENST00000418645 1148 ntBASIC20.46■□□□□ 0.87
BDNFP23560 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC20.46■□□□□ 0.87
BDNFP23560 AC021087.1-201ENST00000512642 522 ntTSL 2 BASIC20.46■□□□□ 0.87
BDNFP23560 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC20.46■□□□□ 0.87
BDNFP23560 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC20.46■□□□□ 0.87
BDNFP23560 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC20.46■□□□□ 0.87
BDNFP23560 LINC01023-201ENST00000606054 436 ntBASIC20.46■□□□□ 0.87
BDNFP23560 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
BDNFP23560 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
BDNFP23560 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC20.46■□□□□ 0.87
BDNFP23560 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC20.46■□□□□ 0.87
BDNFP23560 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
BDNFP23560 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
BDNFP23560 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC20.46■□□□□ 0.87
BDNFP23560 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC20.46■□□□□ 0.87
BDNFP23560 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
BDNFP23560 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC20.45■□□□□ 0.86
BDNFP23560 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
BDNFP23560 ANKRD18DP-204ENST00000455355 1975 ntBASIC20.45■□□□□ 0.86
BDNFP23560 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC20.45■□□□□ 0.86
BDNFP23560 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
BDNFP23560 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
BDNFP23560 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
BDNFP23560 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC20.45■□□□□ 0.86
BDNFP23560 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC20.45■□□□□ 0.86
BDNFP23560 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC20.45■□□□□ 0.86
BDNFP23560 FITM1-202ENST00000559294 800 ntBASIC20.45■□□□□ 0.86
BDNFP23560 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
BDNFP23560 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
BDNFP23560 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC20.45■□□□□ 0.86
BDNFP23560 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
BDNFP23560 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
BDNFP23560 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC20.44■□□□□ 0.86
BDNFP23560 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
BDNFP23560 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC20.44■□□□□ 0.86
BDNFP23560 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
BDNFP23560 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
BDNFP23560 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
BDNFP23560 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC20.44■□□□□ 0.86
BDNFP23560 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
BDNFP23560 AC091390.4-202ENST00000476426 537 ntBASIC20.44■□□□□ 0.86
BDNFP23560 AC097488.1-201ENST00000507834 756 ntBASIC20.44■□□□□ 0.86
BDNFP23560 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC20.44■□□□□ 0.86
BDNFP23560 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC20.44■□□□□ 0.86
BDNFP23560 GLDC-219ENST00000640208 420 ntTSL 2 BASIC20.44■□□□□ 0.86
BDNFP23560 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC20.44■□□□□ 0.86
BDNFP23560 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC20.44■□□□□ 0.86
BDNFP23560 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC20.44■□□□□ 0.86
BDNFP23560 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC20.44■□□□□ 0.86
BDNFP23560 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
BDNFP23560 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC20.44■□□□□ 0.86
BDNFP23560 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
BDNFP23560 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC20.44■□□□□ 0.86
BDNFP23560 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC20.44■□□□□ 0.86
BDNFP23560 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
BDNFP23560 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
BDNFP23560 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC20.43■□□□□ 0.86
BDNFP23560 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
BDNFP23560 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
BDNFP23560 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
BDNFP23560 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
BDNFP23560 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
BDNFP23560 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
BDNFP23560 GRAMD4P8-201ENST00000605465 1115 ntBASIC20.43■□□□□ 0.86
BDNFP23560 DGCR10-201ENST00000609839 495 ntBASIC20.43■□□□□ 0.86
BDNFP23560 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
BDNFP23560 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
BDNFP23560 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC20.43■□□□□ 0.86
BDNFP23560 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
BDNFP23560 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
BDNFP23560 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC20.43■□□□□ 0.86
BDNFP23560 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
BDNFP23560 CYP2D8P-201ENST00000433633 1490 ntBASIC20.43■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 61.6 ms