Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
USF1P22415 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
USF1P22415 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
USF1P22415 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC16.41■□□□□ 0.22
USF1P22415 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
USF1P22415 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC16.41■□□□□ 0.22
USF1P22415 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC16.41■□□□□ 0.22
USF1P22415 PPP1R14BP5-201ENST00000440334 435 ntBASIC16.41■□□□□ 0.22
USF1P22415 SLC25A3P1-201ENST00000443844 931 ntBASIC16.41■□□□□ 0.22
USF1P22415 YBX1P10-201ENST00000444752 975 ntBASIC16.41■□□□□ 0.22
USF1P22415 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC16.41■□□□□ 0.22
USF1P22415 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
USF1P22415 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC16.41■□□□□ 0.22
USF1P22415 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC16.41■□□□□ 0.22
USF1P22415 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
USF1P22415 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC16.41■□□□□ 0.22
USF1P22415 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
USF1P22415 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
USF1P22415 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
USF1P22415 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
USF1P22415 DET1-207ENST00000564406 2315 ntTSL 2 BASIC16.41■□□□□ 0.22
USF1P22415 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
USF1P22415 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
USF1P22415 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
USF1P22415 SNTB2-201ENST00000336278 9789 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
USF1P22415 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
USF1P22415 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
USF1P22415 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
USF1P22415 DPP3P2-201ENST00000416030 1696 ntBASIC16.4■□□□□ 0.22
USF1P22415 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
USF1P22415 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC16.4■□□□□ 0.22
USF1P22415 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
USF1P22415 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC16.4■□□□□ 0.22
USF1P22415 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC16.4■□□□□ 0.22
USF1P22415 AC116351.2-201ENST00000606540 1585 ntBASIC16.4■□□□□ 0.22
USF1P22415 RALGAPA1-219ENST00000637992 8512 ntTSL 5 BASIC16.4■□□□□ 0.22
USF1P22415 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
USF1P22415 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
USF1P22415 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
USF1P22415 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
USF1P22415 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC16.4■□□□□ 0.22
USF1P22415 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
USF1P22415 LIN28AP1-201ENST00000429574 405 ntBASIC16.4■□□□□ 0.22
USF1P22415 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC16.4■□□□□ 0.22
USF1P22415 NME3-204ENST00000563498 920 ntTSL 2 BASIC16.4■□□□□ 0.22
USF1P22415 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC16.4■□□□□ 0.22
USF1P22415 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
USF1P22415 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC16.4■□□□□ 0.22
USF1P22415 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
USF1P22415 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
USF1P22415 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
USF1P22415 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
USF1P22415 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC16.4■□□□□ 0.22
USF1P22415 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC16.4■□□□□ 0.22
USF1P22415 NFATC1-217ENST00000591814 4819 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
USF1P22415 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
USF1P22415 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
USF1P22415 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
USF1P22415 ARHGAP26-201ENST00000274498 6862 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
USF1P22415 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
USF1P22415 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC16.4■□□□□ 0.22
USF1P22415 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
USF1P22415 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC16.39■□□□□ 0.22
USF1P22415 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
USF1P22415 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
USF1P22415 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC16.39■□□□□ 0.21
USF1P22415 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
USF1P22415 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
USF1P22415 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC16.39■□□□□ 0.21
USF1P22415 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
USF1P22415 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
USF1P22415 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC16.39■□□□□ 0.21
USF1P22415 TUBB8P6-201ENST00000436895 1288 ntBASIC16.39■□□□□ 0.21
USF1P22415 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
USF1P22415 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
USF1P22415 TPM1-226ENST00000560959 925 ntTSL 2 BASIC16.39■□□□□ 0.21
USF1P22415 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC16.39■□□□□ 0.21
USF1P22415 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC16.39■□□□□ 0.21
USF1P22415 DGCR10-201ENST00000609839 495 ntBASIC16.39■□□□□ 0.21
USF1P22415 AC131212.4-201ENST00000623606 975 ntBASIC16.39■□□□□ 0.21
USF1P22415 TMEM131-201ENST00000186436 6640 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
USF1P22415 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
USF1P22415 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC16.39■□□□□ 0.21
USF1P22415 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
USF1P22415 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC16.39■□□□□ 0.21
USF1P22415 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC16.39■□□□□ 0.21
USF1P22415 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
USF1P22415 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.21
USF1P22415 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC16.39■□□□□ 0.21
USF1P22415 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
USF1P22415 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
USF1P22415 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
USF1P22415 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
USF1P22415 ABHD13-201ENST00000375898 5338 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
USF1P22415 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
USF1P22415 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
USF1P22415 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC16.38■□□□□ 0.21
USF1P22415 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
USF1P22415 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC16.38■□□□□ 0.21
USF1P22415 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 21.6 ms