Protein–RNA interactions for Protein: P22223

CDH3, Cadherin-3, humanhuman

Predictions only

Length 829 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3P22223 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
CDH3P22223 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC18.96■□□□□ 0.63
CDH3P22223 MOK-228ENST00000523231 1114 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
CDH3P22223 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC18.96■□□□□ 0.63
CDH3P22223 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC18.96■□□□□ 0.63
CDH3P22223 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC18.96■□□□□ 0.63
CDH3P22223 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC18.96■□□□□ 0.63
CDH3P22223 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC18.96■□□□□ 0.63
CDH3P22223 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
CDH3P22223 PCDHAC2-203ENST00000615316 3011 ntBASIC18.96■□□□□ 0.63
CDH3P22223 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC18.96■□□□□ 0.63
CDH3P22223 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CDH3P22223 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CDH3P22223 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
CDH3P22223 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CDH3P22223 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC18.95■□□□□ 0.62
CDH3P22223 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC18.95■□□□□ 0.62
CDH3P22223 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CDH3P22223 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
CDH3P22223 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC18.95■□□□□ 0.62
CDH3P22223 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC18.95■□□□□ 0.62
CDH3P22223 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CDH3P22223 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CDH3P22223 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC18.95■□□□□ 0.62
CDH3P22223 WDR74-201ENST00000278856 1289 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CDH3P22223 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC18.95■□□□□ 0.62
CDH3P22223 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC18.95■□□□□ 0.62
CDH3P22223 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
CDH3P22223 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC18.95■□□□□ 0.62
CDH3P22223 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC18.95■□□□□ 0.62
CDH3P22223 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC18.95■□□□□ 0.62
CDH3P22223 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC18.95■□□□□ 0.62
CDH3P22223 MTA1-201ENST00000331320 2876 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
CDH3P22223 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC18.95■□□□□ 0.62
CDH3P22223 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC18.95■□□□□ 0.62
CDH3P22223 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
CDH3P22223 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CDH3P22223 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC18.95■□□□□ 0.62
CDH3P22223 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
CDH3P22223 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
CDH3P22223 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
CDH3P22223 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC18.94■□□□□ 0.62
CDH3P22223 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
CDH3P22223 AC098818.2-201ENST00000564925 2320 ntBASIC18.94■□□□□ 0.62
CDH3P22223 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC18.94■□□□□ 0.62
CDH3P22223 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
CDH3P22223 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC18.94■□□□□ 0.62
CDH3P22223 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
CDH3P22223 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC18.94■□□□□ 0.62
CDH3P22223 YBX1P10-201ENST00000444752 975 ntBASIC18.94■□□□□ 0.62
CDH3P22223 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
CDH3P22223 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC18.94■□□□□ 0.62
CDH3P22223 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
CDH3P22223 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
CDH3P22223 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
CDH3P22223 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
CDH3P22223 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC18.94■□□□□ 0.62
CDH3P22223 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC18.94■□□□□ 0.62
CDH3P22223 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC18.94■□□□□ 0.62
CDH3P22223 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC18.94■□□□□ 0.62
CDH3P22223 ME2-218ENST00000640965 2476 ntTSL 5 BASIC18.94■□□□□ 0.62
CDH3P22223 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
CDH3P22223 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
CDH3P22223 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
CDH3P22223 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC18.93■□□□□ 0.62
CDH3P22223 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
CDH3P22223 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC18.93■□□□□ 0.62
CDH3P22223 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC18.93■□□□□ 0.62
CDH3P22223 MOK-225ENST00000522867 1883 ntTSL 5 BASIC18.93■□□□□ 0.62
CDH3P22223 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC18.93■□□□□ 0.62
CDH3P22223 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
CDH3P22223 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
CDH3P22223 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC18.93■□□□□ 0.62
CDH3P22223 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
CDH3P22223 RALGPS1-206ENST00000394011 819 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
CDH3P22223 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC18.93■□□□□ 0.62
CDH3P22223 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC18.93■□□□□ 0.62
CDH3P22223 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
CDH3P22223 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
CDH3P22223 AP002982.1-201ENST00000492365 877 ntBASIC18.93■□□□□ 0.62
CDH3P22223 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC18.93■□□□□ 0.62
CDH3P22223 AF186192.3-201ENST00000583427 947 ntBASIC18.93■□□□□ 0.62
CDH3P22223 RPS15-203ENST00000586096 570 ntTSL 2 BASIC18.93■□□□□ 0.62
CDH3P22223 AC113410.3-201ENST00000623366 203 ntBASIC18.93■□□□□ 0.62
CDH3P22223 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC18.93■□□□□ 0.62
CDH3P22223 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
CDH3P22223 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
CDH3P22223 DDRGK1-201ENST00000354488 1306 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
CDH3P22223 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
CDH3P22223 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC18.93■□□□□ 0.62
CDH3P22223 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC18.93■□□□□ 0.62
CDH3P22223 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
CDH3P22223 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
CDH3P22223 RAX2-201ENST00000555633 2414 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
CDH3P22223 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC18.92■□□□□ 0.62
CDH3P22223 C19orf66-209ENST00000591813 1481 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
CDH3P22223 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC18.92■□□□□ 0.62
CDH3P22223 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
CDH3P22223 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC18.92■□□□□ 0.62
CDH3P22223 C1QBP-201ENST00000225698 1169 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 394 ms