Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
COL5A1P20908 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
COL5A1P20908 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
COL5A1P20908 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
COL5A1P20908 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
COL5A1P20908 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
COL5A1P20908 MMAB-204ENST00000537236 1342 ntTSL 3 BASIC18.65■□□□□ 0.58
COL5A1P20908 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
COL5A1P20908 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
COL5A1P20908 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC18.65■□□□□ 0.58
COL5A1P20908 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
COL5A1P20908 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
COL5A1P20908 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC18.65■□□□□ 0.58
COL5A1P20908 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
COL5A1P20908 CNP-204ENST00000472031 1019 ntTSL 2 BASIC18.65■□□□□ 0.58
COL5A1P20908 PTK2-216ENST00000519881 863 ntTSL 3 BASIC18.65■□□□□ 0.58
COL5A1P20908 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC18.65■□□□□ 0.58
COL5A1P20908 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
COL5A1P20908 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
COL5A1P20908 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
COL5A1P20908 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
COL5A1P20908 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
COL5A1P20908 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
COL5A1P20908 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC18.64■□□□□ 0.58
COL5A1P20908 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC18.64■□□□□ 0.57
COL5A1P20908 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC18.64■□□□□ 0.57
COL5A1P20908 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC18.64■□□□□ 0.57
COL5A1P20908 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC18.64■□□□□ 0.57
COL5A1P20908 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
COL5A1P20908 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
COL5A1P20908 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
COL5A1P20908 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC18.64■□□□□ 0.57
COL5A1P20908 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC18.64■□□□□ 0.57
COL5A1P20908 SNX5-210ENST00000481323 562 ntTSL 3 BASIC18.64■□□□□ 0.57
COL5A1P20908 HYMAI.1-201ENST00000620949 238 ntBASIC18.64■□□□□ 0.57
COL5A1P20908 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
COL5A1P20908 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
COL5A1P20908 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC18.64■□□□□ 0.57
COL5A1P20908 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC18.64■□□□□ 0.57
COL5A1P20908 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
COL5A1P20908 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
COL5A1P20908 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC18.64■□□□□ 0.57
COL5A1P20908 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
COL5A1P20908 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
COL5A1P20908 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC18.64■□□□□ 0.57
COL5A1P20908 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
COL5A1P20908 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
COL5A1P20908 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC18.64■□□□□ 0.57
COL5A1P20908 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC18.64■□□□□ 0.57
COL5A1P20908 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
COL5A1P20908 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC18.64■□□□□ 0.57
COL5A1P20908 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
COL5A1P20908 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
COL5A1P20908 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
COL5A1P20908 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
COL5A1P20908 ATP5G2P1-201ENST00000433580 426 ntBASIC18.63■□□□□ 0.57
COL5A1P20908 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC18.63■□□□□ 0.57
COL5A1P20908 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC18.63■□□□□ 0.57
COL5A1P20908 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC18.63■□□□□ 0.57
COL5A1P20908 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC18.63■□□□□ 0.57
COL5A1P20908 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC18.63■□□□□ 0.57
COL5A1P20908 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
COL5A1P20908 GPX4-210ENST00000611653 793 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
COL5A1P20908 AC012366.1-201ENST00000615411 473 ntTSL 5 BASIC18.63■□□□□ 0.57
COL5A1P20908 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
COL5A1P20908 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
COL5A1P20908 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
COL5A1P20908 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
COL5A1P20908 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
COL5A1P20908 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
COL5A1P20908 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC18.63■□□□□ 0.57
COL5A1P20908 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
COL5A1P20908 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
COL5A1P20908 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
COL5A1P20908 ILF2-202ENST00000368681 726 ntTSL 2 BASIC18.63■□□□□ 0.57
COL5A1P20908 SPDYE15P-201ENST00000424157 909 ntBASIC18.63■□□□□ 0.57
COL5A1P20908 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC18.63■□□□□ 0.57
COL5A1P20908 USP48-205ENST00000421625 2818 ntTSL 2 BASIC18.63■□□□□ 0.57
COL5A1P20908 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
COL5A1P20908 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
COL5A1P20908 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
COL5A1P20908 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
COL5A1P20908 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC18.62■□□□□ 0.57
COL5A1P20908 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
COL5A1P20908 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC18.62■□□□□ 0.57
COL5A1P20908 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC18.62■□□□□ 0.57
COL5A1P20908 CD37-204ENST00000535669 1674 ntTSL 2 BASIC18.62■□□□□ 0.57
COL5A1P20908 GJA8-201ENST00000369235 1302 ntAPPRIS P1 BASIC18.62■□□□□ 0.57
COL5A1P20908 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
COL5A1P20908 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
COL5A1P20908 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC18.62■□□□□ 0.57
COL5A1P20908 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC18.62■□□□□ 0.57
COL5A1P20908 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
COL5A1P20908 SPDYE13P-201ENST00000445314 798 ntBASIC18.62■□□□□ 0.57
COL5A1P20908 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC18.62■□□□□ 0.57
COL5A1P20908 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC18.62■□□□□ 0.57
COL5A1P20908 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC18.62■□□□□ 0.57
COL5A1P20908 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC18.62■□□□□ 0.57
COL5A1P20908 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC18.62■□□□□ 0.57
COL5A1P20908 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 33.6 ms