Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 MTFR1L-216ENST00000525713 575 ntTSL 419.42■□□□□ 0.76e-7■■■□□ 14.8
YBX3P16989 MTFR1L-211ENST00000478284 793 ntTSL 318.23■□□□□ 0.516e-7■■■□□ 14.8
YBX3P16989 MTFR1L-221ENST00000530599 763 ntTSL 414.2□□□□□ -0.146e-7■■■□□ 14.8
YBX3P16989 MTFR1L-205ENST00000424294 756 ntTSL 511.34□□□□□ -0.596e-7■■■□□ 14.8
YBX3P16989 MTFR1L-222ENST00000531361 637 ntTSL 510.02□□□□□ -0.816e-7■■■□□ 14.8
YBX3P16989 SARAF-208ENST00000521265 1741 ntTSL 518.26■□□□□ 0.515e-9■■■□□ 14.8
YBX3P16989 EIF3K-213ENST00000593149 760 ntTSL 2 BASIC16.25■□□□□ 0.192e-12■■■□□ 14.8
YBX3P16989 EIF3K-201ENST00000248342 864 ntAPPRIS P2 TSL 1 (best) BASIC14.53□□□□□ -0.082e-12■■■□□ 14.8
YBX3P16989 EIF3K-214ENST00000614624 780 ntTSL 1 (best) BASIC14.53□□□□□ -0.082e-12■■■□□ 14.8
YBX3P16989 EIF3K-208ENST00000588934 501 ntTSL 3 BASIC13.53□□□□□ -0.242e-12■■■□□ 14.8
YBX3P16989 EIF3K-211ENST00000592558 670 ntTSL 2 BASIC13.07□□□□□ -0.322e-12■■■□□ 14.8
YBX3P16989 RHOT1-207ENST00000580392 650 ntTSL 311.09□□□□□ -0.632e-7■■■□□ 14.8
YBX3P16989 RHOT1-216ENST00000584692 680 ntTSL 29.49□□□□□ -0.892e-7■■■□□ 14.8
YBX3P16989 RHOT1-211ENST00000581148 628 ntTSL 26.17□□□□□ -1.422e-7■■■□□ 14.8
YBX3P16989 RHOT1-214ENST00000582602 570 ntTSL 36.1□□□□□ -1.432e-7■■■□□ 14.8
YBX3P16989 LCMT1-209ENST00000574450 517 ntTSL 218.17■□□□□ 0.52e-9■■■□□ 14.8
YBX3P16989 LCMT1-210ENST00000575396 449 ntTSL 318.17■□□□□ 0.52e-9■■■□□ 14.8
YBX3P16989 LCMT1-203ENST00000399069 1368 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.352e-9■■■□□ 14.8
YBX3P16989 LCMT1-204ENST00000564011 1168 ntTSL 514.66□□□□□ -0.062e-9■■■□□ 14.8
YBX3P16989 LCMT1-201ENST00000380962 1529 ntTSL 214.1□□□□□ -0.152e-9■■■□□ 14.8
YBX3P16989 LCMT1-212ENST00000576625 640 ntTSL 512.61□□□□□ -0.392e-9■■■□□ 14.8
YBX3P16989 SLC6A8-204ENST00000430077 1892 ntTSL 2 BASIC19.53■□□□□ 0.726e-12■■■□□ 14.8
YBX3P16989 CAPN1-225ENST00000533704 643 ntTSL 313.92□□□□□ -0.186e-9■■■□□ 14.8
YBX3P16989 MDN1-205ENST00000629399 17400 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.431e-6■■■□□ 14.8
YBX3P16989 MDN1-201ENST00000369393 18413 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.481e-6■■■□□ 14.8
YBX3P16989 IGF1R-201ENST00000268035 11803 ntAPPRIS P3 TSL 1 (best) BASIC10.94□□□□□ -0.662e-7■■■□□ 14.8
YBX3P16989 IGF1R-206ENST00000558762 11726 ntAPPRIS ALT1 TSL 1 (best) BASIC7.93□□□□□ -1.142e-7■■■□□ 14.8
YBX3P16989 HHEX-204ENST00000551454 1307 ntTSL 1 (best)27.95■■■□□ 2.071e-6■■■□□ 14.8
YBX3P16989 LTA4H-203ENST00000537111 1881 ntTSL 1 (best)5.05□□□□□ -1.67e-6■■■□□ 14.8
YBX3P16989 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC21.92■■□□□ 1.18e-6■■■□□ 14.8
YBX3P16989 ZYG11B-201ENST00000294353 8093 ntAPPRIS P1 TSL 1 (best) BASIC7.24□□□□□ -1.258e-6■■■□□ 14.8
YBX3P16989 POFUT1-203ENST00000434904 493 ntTSL 56.05□□□□□ -1.441e-7■■■□□ 14.8
YBX3P16989 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC24■■□□□ 1.437e-7■■■□□ 14.7
YBX3P16989 C17orf58-203ENST00000536693 1654 ntTSL 1 (best)22.9■■□□□ 1.267e-7■■■□□ 14.7
YBX3P16989 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC22.42■■□□□ 1.187e-7■■■□□ 14.7
YBX3P16989 C17orf58-202ENST00000449250 1082 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.557e-7■■■□□ 14.7
YBX3P16989 TALDO1-201ENST00000319006 1346 ntAPPRIS P1 TSL 1 (best) BASIC28.39■■■□□ 2.138e-12■■■□□ 14.7
YBX3P16989 TALDO1-203ENST00000528097 1231 ntTSL 1 (best) BASIC19.79■□□□□ 0.768e-12■■■□□ 14.7
YBX3P16989 TALDO1-205ENST00000530440 710 ntTSL 316.34■□□□□ 0.218e-12■■■□□ 14.7
YBX3P16989 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.759e-7■■■□□ 14.7
YBX3P16989 GRAP2-201ENST00000344138 3893 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.449e-7■■■□□ 14.7
YBX3P16989 GRAP2-203ENST00000420971 568 ntTSL 210.11□□□□□ -0.799e-7■■■□□ 14.7
YBX3P16989 GRAP2-206ENST00000478445 583 ntTSL 48.31□□□□□ -1.089e-7■■■□□ 14.7
YBX3P16989 CPED1-204ENST00000428526 2219 ntTSL 29.61□□□□□ -0.879e-18■■■□□ 14.7
YBX3P16989 CPED1-206ENST00000450913 2501 ntTSL 1 (best) BASIC6.92□□□□□ -1.39e-18■■■□□ 14.7
YBX3P16989 CPED1-205ENST00000443817 1118 ntTSL 1 (best)6.91□□□□□ -1.39e-18■■■□□ 14.7
YBX3P16989 CPED1-203ENST00000423795 2189 ntTSL 1 (best) BASIC6.68□□□□□ -1.349e-18■■■□□ 14.7
YBX3P16989 DRG1-204ENST00000469673 677 ntTSL 29.02□□□□□ -0.972e-10■■■□□ 14.7
YBX3P16989 DRG1-206ENST00000548143 338 ntTSL 27.21□□□□□ -1.262e-10■■■□□ 14.7
YBX3P16989 MICB-203ENST00000494577 907 ntTSL 319.46■□□□□ 0.716e-7■■■□□ 14.7
YBX3P16989 KDELR2-204ENST00000462052 382 ntTSL 211.38□□□□□ -0.593e-10■■■□□ 14.7
YBX3P16989 CHMP4B-201ENST00000217402 1646 ntAPPRIS P1 TSL 1 (best) BASIC33.57■■■□□ 2.972e-7■■■□□ 14.7
YBX3P16989 ZDHHC14-204ENST00000414563 3134 ntTSL 1 (best) BASIC22.64■■□□□ 1.211e-8■■■□□ 14.7
YBX3P16989 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.841e-8■■■□□ 14.7
YBX3P16989 ZDHHC14-202ENST00000341375 1934 ntTSL 1 (best)20.04■□□□□ 0.81e-8■■■□□ 14.7
YBX3P16989 ZDHHC14-207ENST00000518214 861 ntTSL 314.06□□□□□ -0.161e-8■■■□□ 14.7
YBX3P16989 ZDHHC14-209ENST00000523706 5146 ntTSL 213.69□□□□□ -0.221e-8■■■□□ 14.7
YBX3P16989 ZDHHC14-206ENST00000517432 3646 ntTSL 210.88□□□□□ -0.671e-8■■■□□ 14.7
YBX3P16989 ZDHHC14-201ENST00000340347 328 ntTSL 59.35□□□□□ -0.911e-8■■■□□ 14.7
YBX3P16989 NCAPG2-208ENST00000474940 583 ntTSL 417.59■□□□□ 0.411e-6■■■□□ 14.7
YBX3P16989 NCAPG2-209ENST00000475918 557 ntTSL 416.43■□□□□ 0.221e-6■■■□□ 14.7
YBX3P16989 SEC24D-201ENST00000280551 4030 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.62e-6■■■□□ 14.7
YBX3P16989 H2AFY-206ENST00000504197 498 ntTSL 216.35■□□□□ 0.211e-7■■■□□ 14.7
YBX3P16989 TMEM9-208ENST00000472411 2892 ntTSL 210.75□□□□□ -0.695e-7■■■□□ 14.7
YBX3P16989 RPS2-211ENST00000531065 1548 ntTSL 535.48■■■■□ 3.271e-62■■■□□ 14.7
YBX3P16989 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC35.3■■■■□ 3.241e-62■■■□□ 14.7
YBX3P16989 RPS2-202ENST00000526522 924 ntTSL 2 BASIC35.26■■■■□ 3.241e-62■■■□□ 14.7
YBX3P16989 RPS2-205ENST00000527109 1030 ntTSL 1 (best)35.26■■■■□ 3.241e-62■■■□□ 14.7
YBX3P16989 RPS2-209ENST00000529806 993 ntTSL 3 BASIC34.36■■■■□ 3.091e-62■■■□□ 14.7
YBX3P16989 RPS2-208ENST00000527871 1243 ntTSL 1 (best)33.29■■■□□ 2.921e-62■■■□□ 14.7
YBX3P16989 RPS2-213ENST00000533161 1186 ntTSL 1 (best)33.24■■■□□ 2.911e-62■■■□□ 14.7
YBX3P16989 RPS2-210ENST00000530225 765 ntTSL 2 BASIC31.8■■■□□ 2.681e-62■■■□□ 14.7
YBX3P16989 RPS2-215ENST00000533872 1114 ntTSL 531.01■■■□□ 2.551e-62■■■□□ 14.7
YBX3P16989 RPS2-212ENST00000532746 931 ntTSL 312.38□□□□□ -0.431e-62■■■□□ 14.7
YBX3P16989 FLNA-210ENST00000462590 1026 ntTSL 1 (best)18.32■□□□□ 0.522e-27■■■□□ 14.7
YBX3P16989 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC30.16■■■□□ 2.422e-12■■■□□ 14.7
YBX3P16989 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC28.92■■■□□ 2.222e-12■■■□□ 14.7
YBX3P16989 PRELID1-205ENST00000504594 886 ntTSL 324.33■■□□□ 1.492e-12■■■□□ 14.7
YBX3P16989 PRELID1-204ENST00000503853 608 ntTSL 211.75□□□□□ -0.532e-12■■■□□ 14.7
YBX3P16989 TPD52L1-205ENST00000392483 581 ntTSL 221.86■■□□□ 1.092e-17■■■□□ 14.7
YBX3P16989 TPD52L1-212ENST00000532978 2489 ntTSL 217.33■□□□□ 0.372e-17■■■□□ 14.7
YBX3P16989 TPD52L1-215ENST00000534368 684 ntTSL 38.8□□□□□ -12e-17■■■□□ 14.7
YBX3P16989 FOXRED1-204ENST00000525770 1427 ntTSL 219.6■□□□□ 0.734e-6■■■□□ 14.7
YBX3P16989 FOXRED1-214ENST00000532590 674 ntTSL 28.86□□□□□ -0.994e-6■■■□□ 14.7
YBX3P16989 ARHGAP6-202ENST00000337414 5117 ntAPPRIS P4 TSL 1 (best) BASIC17.65■□□□□ 0.427e-7■■■□□ 14.7
YBX3P16989 CTDSP2-201ENST00000398073 4795 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.272e-7■■■□□ 14.7
YBX3P16989 ARHGAP6-208ENST00000495242 5303 ntTSL 1 (best)16.3■□□□□ 0.27e-7■■■□□ 14.7
YBX3P16989 ARHGAP6-206ENST00000489330 6299 ntTSL 215.14■□□□□ 0.017e-7■■■□□ 14.7
YBX3P16989 ARHGAP6-204ENST00000380718 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 07e-7■■■□□ 14.7
YBX3P16989 ARHGAP6-203ENST00000380717 2267 ntAPPRIS ALT2 TSL 1 (best)14.84□□□□□ -0.037e-7■■■□□ 14.7
YBX3P16989 ARHGAP6-201ENST00000303025 3946 ntAPPRIS ALT2 TSL 1 (best) BASIC12.29□□□□□ -0.447e-7■■■□□ 14.7
YBX3P16989 ARHGAP6-205ENST00000380736 3883 ntAPPRIS ALT2 TSL 1 (best) BASIC12.19□□□□□ -0.467e-7■■■□□ 14.7
YBX3P16989 SLC25A22-208ENST00000527127 586 ntTSL 332.06■■■□□ 2.721e-8■■■□□ 14.7
YBX3P16989 SLC25A22-220ENST00000532361 970 ntTSL 1 (best)30.35■■■□□ 2.451e-8■■■□□ 14.7
YBX3P16989 SLC25A22-205ENST00000525010 534 ntTSL 529.4■■■□□ 2.31e-8■■■□□ 14.7
YBX3P16989 SLC25A22-217ENST00000531437 802 ntTSL 527.91■■■□□ 2.061e-8■■■□□ 14.7
YBX3P16989 SLC25A22-215ENST00000530360 736 ntTSL 527.37■■□□□ 1.971e-8■■■□□ 14.7
YBX3P16989 SLC25A22-214ENST00000529351 1079 ntTSL 526.34■■□□□ 1.811e-8■■■□□ 14.7
YBX3P16989 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC24.82■■□□□ 1.561e-8■■■□□ 14.7
YBX3P16989 SLC25A22-229ENST00000629602 537 ntTSL 424.52■■□□□ 1.521e-8■■■□□ 14.7
Retrieved 100 of 29,075 protein–RNA pairs in 536.3 ms