Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC19.44■□□□□ 0.7
SHOX2O60902 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC19.44■□□□□ 0.7
SHOX2O60902 ADCY6-206ENST00000550422 5877 ntTSL 2 BASIC19.43■□□□□ 0.7
SHOX2O60902 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SHOX2O60902 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC19.43■□□□□ 0.7
SHOX2O60902 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SHOX2O60902 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SHOX2O60902 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
SHOX2O60902 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SHOX2O60902 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC19.43■□□□□ 0.7
SHOX2O60902 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
SHOX2O60902 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
SHOX2O60902 STAMBPL1-203ENST00000371926 2532 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SHOX2O60902 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
SHOX2O60902 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC19.43■□□□□ 0.7
SHOX2O60902 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC19.43■□□□□ 0.7
SHOX2O60902 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC19.43■□□□□ 0.7
SHOX2O60902 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SHOX2O60902 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
SHOX2O60902 AC084018.2-201ENST00000613093 2607 ntBASIC19.43■□□□□ 0.7
SHOX2O60902 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC19.43■□□□□ 0.7
SHOX2O60902 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC19.43■□□□□ 0.7
SHOX2O60902 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
SHOX2O60902 BPIFB4-201ENST00000375483 2159 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
SHOX2O60902 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC19.43■□□□□ 0.7
SHOX2O60902 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SHOX2O60902 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
SHOX2O60902 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SHOX2O60902 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
SHOX2O60902 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC19.43■□□□□ 0.7
SHOX2O60902 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SHOX2O60902 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
SHOX2O60902 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
SHOX2O60902 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC19.42■□□□□ 0.7
SHOX2O60902 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
SHOX2O60902 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC19.42■□□□□ 0.7
SHOX2O60902 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC19.42■□□□□ 0.7
SHOX2O60902 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SHOX2O60902 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
SHOX2O60902 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
SHOX2O60902 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
SHOX2O60902 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SHOX2O60902 AC134043.2-201ENST00000624206 2238 ntBASIC19.42■□□□□ 0.7
SHOX2O60902 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SHOX2O60902 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
SHOX2O60902 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC19.42■□□□□ 0.7
SHOX2O60902 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
SHOX2O60902 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC19.42■□□□□ 0.7
SHOX2O60902 GABBR1-204ENST00000377016 4299 ntTSL 5 BASIC19.42■□□□□ 0.7
SHOX2O60902 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC19.42■□□□□ 0.7
SHOX2O60902 SLC39A1-211ENST00000621013 2322 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
SHOX2O60902 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
SHOX2O60902 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC19.42■□□□□ 0.7
SHOX2O60902 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SHOX2O60902 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
SHOX2O60902 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC19.42■□□□□ 0.7
SHOX2O60902 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SHOX2O60902 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
SHOX2O60902 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SHOX2O60902 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC19.41■□□□□ 0.7
SHOX2O60902 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SHOX2O60902 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC19.41■□□□□ 0.7
SHOX2O60902 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
SHOX2O60902 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
SHOX2O60902 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC19.41■□□□□ 0.7
SHOX2O60902 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC19.41■□□□□ 0.7
SHOX2O60902 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC19.41■□□□□ 0.7
SHOX2O60902 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC19.41■□□□□ 0.7
SHOX2O60902 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
SHOX2O60902 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
SHOX2O60902 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SHOX2O60902 UNC93B3-201ENST00000308076 687 ntBASIC19.41■□□□□ 0.7
SHOX2O60902 AC007322.3-201ENST00000426526 701 ntBASIC19.41■□□□□ 0.7
SHOX2O60902 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
SHOX2O60902 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SHOX2O60902 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SHOX2O60902 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SHOX2O60902 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
SHOX2O60902 DIABLO-206ENST00000443649 2250 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
SHOX2O60902 IRX1P1-201ENST00000438849 1838 ntBASIC19.41■□□□□ 0.7
SHOX2O60902 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
SHOX2O60902 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.7
SHOX2O60902 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SHOX2O60902 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC19.41■□□□□ 0.7
SHOX2O60902 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
SHOX2O60902 MAZ-214ENST00000568544 1464 ntTSL 2 BASIC19.41■□□□□ 0.7
SHOX2O60902 CTSB-232ENST00000534510 1989 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
SHOX2O60902 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
SHOX2O60902 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC19.4■□□□□ 0.7
SHOX2O60902 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
SHOX2O60902 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SHOX2O60902 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC19.4■□□□□ 0.7
SHOX2O60902 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC19.4■□□□□ 0.7
SHOX2O60902 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SHOX2O60902 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SHOX2O60902 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SHOX2O60902 BX842568.3-201ENST00000418104 571 ntBASIC19.4■□□□□ 0.7
SHOX2O60902 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC19.4■□□□□ 0.7
SHOX2O60902 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SHOX2O60902 PILRB-208ENST00000452089 2099 ntAPPRIS P2 TSL 2 BASIC19.4■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 24.8 ms