Protein–RNA interactions for Protein: O00337

SLC28A1, Sodium/nucleoside cotransporter 1, humanhuman

Predictions only

Length 649 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC28A1O00337 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
SLC28A1O00337 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SLC28A1O00337 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SLC28A1O00337 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SLC28A1O00337 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
SLC28A1O00337 ANKRD18DP-204ENST00000455355 1975 ntBASIC18.66■□□□□ 0.58
SLC28A1O00337 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
SLC28A1O00337 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
SLC28A1O00337 UBXN2A-201ENST00000309033 6066 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SLC28A1O00337 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SLC28A1O00337 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC18.66■□□□□ 0.58
SLC28A1O00337 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SLC28A1O00337 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
SLC28A1O00337 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC18.66■□□□□ 0.58
SLC28A1O00337 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC18.66■□□□□ 0.58
SLC28A1O00337 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC18.66■□□□□ 0.58
SLC28A1O00337 ABHD17AP6-201ENST00000458502 1044 ntBASIC18.66■□□□□ 0.58
SLC28A1O00337 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC18.66■□□□□ 0.58
SLC28A1O00337 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
SLC28A1O00337 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC18.66■□□□□ 0.58
SLC28A1O00337 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC18.66■□□□□ 0.58
SLC28A1O00337 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SLC28A1O00337 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SLC28A1O00337 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC18.66■□□□□ 0.58
SLC28A1O00337 AL161938.1-201ENST00000569833 2180 ntBASIC18.66■□□□□ 0.58
SLC28A1O00337 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
SLC28A1O00337 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC18.66■□□□□ 0.58
SLC28A1O00337 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC18.66■□□□□ 0.58
SLC28A1O00337 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
SLC28A1O00337 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
SLC28A1O00337 KRT8P8-201ENST00000434750 1448 ntBASIC18.66■□□□□ 0.58
SLC28A1O00337 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
SLC28A1O00337 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
SLC28A1O00337 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SLC28A1O00337 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SLC28A1O00337 RILPL2-201ENST00000280571 6141 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SLC28A1O00337 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
SLC28A1O00337 AC138932.1-201ENST00000534164 6830 ntBASIC18.65■□□□□ 0.58
SLC28A1O00337 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
SLC28A1O00337 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC18.65■□□□□ 0.58
SLC28A1O00337 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC18.65■□□□□ 0.58
SLC28A1O00337 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SLC28A1O00337 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SLC28A1O00337 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
SLC28A1O00337 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC18.65■□□□□ 0.58
SLC28A1O00337 MIR935-201ENST00000401179 91 ntBASIC18.65■□□□□ 0.58
SLC28A1O00337 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC18.65■□□□□ 0.58
SLC28A1O00337 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC18.65■□□□□ 0.58
SLC28A1O00337 AC060766.5-201ENST00000590539 871 ntBASIC18.65■□□□□ 0.58
SLC28A1O00337 PFKL-212ENST00000628044 129 ntTSL 3 BASIC18.65■□□□□ 0.58
SLC28A1O00337 MYC-209ENST00000641252 345 ntBASIC18.65■□□□□ 0.58
SLC28A1O00337 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
SLC28A1O00337 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
SLC28A1O00337 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
SLC28A1O00337 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
SLC28A1O00337 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SLC28A1O00337 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
SLC28A1O00337 TMC5-203ENST00000396229 4917 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.58
SLC28A1O00337 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC18.64■□□□□ 0.57
SLC28A1O00337 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SLC28A1O00337 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
SLC28A1O00337 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC18.64■□□□□ 0.57
SLC28A1O00337 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC18.64■□□□□ 0.57
SLC28A1O00337 PSPN-201ENST00000245810 471 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SLC28A1O00337 RRAS-201ENST00000246792 1044 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SLC28A1O00337 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SLC28A1O00337 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
SLC28A1O00337 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC18.64■□□□□ 0.57
SLC28A1O00337 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SLC28A1O00337 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
SLC28A1O00337 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
SLC28A1O00337 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC18.64■□□□□ 0.57
SLC28A1O00337 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SLC28A1O00337 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
SLC28A1O00337 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
SLC28A1O00337 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
SLC28A1O00337 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SLC28A1O00337 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SLC28A1O00337 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
SLC28A1O00337 AMACR-206ENST00000502637 1598 ntTSL 5 BASIC18.64■□□□□ 0.57
SLC28A1O00337 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
SLC28A1O00337 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
SLC28A1O00337 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
SLC28A1O00337 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC18.63■□□□□ 0.57
SLC28A1O00337 PTH2R-204ENST00000617735 2472 ntTSL 2 BASIC18.63■□□□□ 0.57
SLC28A1O00337 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SLC28A1O00337 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC18.63■□□□□ 0.57
SLC28A1O00337 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
SLC28A1O00337 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
SLC28A1O00337 PNMA6B-201ENST00000538162 1200 ntBASIC18.63■□□□□ 0.57
SLC28A1O00337 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC18.63■□□□□ 0.57
SLC28A1O00337 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC18.63■□□□□ 0.57
SLC28A1O00337 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
SLC28A1O00337 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SLC28A1O00337 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC18.63■□□□□ 0.57
SLC28A1O00337 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SLC28A1O00337 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC18.63■□□□□ 0.57
SLC28A1O00337 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
SLC28A1O00337 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC18.63■□□□□ 0.57
SLC28A1O00337 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 59.3 ms