Protein–RNA interactions for Protein: A0A0B4J280

TRAV40, T-cell receptor alpha variable 40 (Fragment), humanhuman

Predictions only

Length 105 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV40A0A0B4J280 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC15.8■□□□□ 0.12
TRAV40A0A0B4J280 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC15.8■□□□□ 0.12
TRAV40A0A0B4J280 AC113347.1-201ENST00000413321 391 ntBASIC15.8■□□□□ 0.12
TRAV40A0A0B4J280 FAM207BP-201ENST00000447172 505 ntBASIC15.8■□□□□ 0.12
TRAV40A0A0B4J280 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC15.8■□□□□ 0.12
TRAV40A0A0B4J280 TMA16-209ENST00000513272 803 ntTSL 2 BASIC15.8■□□□□ 0.12
TRAV40A0A0B4J280 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC15.8■□□□□ 0.12
TRAV40A0A0B4J280 DUT-205ENST00000558813 769 ntTSL 2 BASIC15.8■□□□□ 0.12
TRAV40A0A0B4J280 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
TRAV40A0A0B4J280 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
TRAV40A0A0B4J280 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
TRAV40A0A0B4J280 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
TRAV40A0A0B4J280 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
TRAV40A0A0B4J280 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC15.8■□□□□ 0.12
TRAV40A0A0B4J280 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
TRAV40A0A0B4J280 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC15.8■□□□□ 0.12
TRAV40A0A0B4J280 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC15.8■□□□□ 0.12
TRAV40A0A0B4J280 AL162377.1-201ENST00000618844 1793 ntBASIC15.8■□□□□ 0.12
TRAV40A0A0B4J280 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
TRAV40A0A0B4J280 AMACR-206ENST00000502637 1598 ntTSL 5 BASIC15.79■□□□□ 0.12
TRAV40A0A0B4J280 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
TRAV40A0A0B4J280 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
TRAV40A0A0B4J280 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
TRAV40A0A0B4J280 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
TRAV40A0A0B4J280 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC15.79■□□□□ 0.12
TRAV40A0A0B4J280 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
TRAV40A0A0B4J280 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
TRAV40A0A0B4J280 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
TRAV40A0A0B4J280 AC005521.1-201ENST00000393351 872 ntBASIC15.79■□□□□ 0.12
TRAV40A0A0B4J280 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC15.79■□□□□ 0.12
TRAV40A0A0B4J280 KRT18P57-201ENST00000443599 1254 ntBASIC15.79■□□□□ 0.12
TRAV40A0A0B4J280 FDX2-206ENST00000492239 773 ntTSL 2 BASIC15.79■□□□□ 0.12
TRAV40A0A0B4J280 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
TRAV40A0A0B4J280 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC15.79■□□□□ 0.12
TRAV40A0A0B4J280 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC15.79■□□□□ 0.12
TRAV40A0A0B4J280 CLN6-221ENST00000637494 765 ntTSL 5 BASIC15.79■□□□□ 0.12
TRAV40A0A0B4J280 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
TRAV40A0A0B4J280 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
TRAV40A0A0B4J280 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC15.79■□□□□ 0.12
TRAV40A0A0B4J280 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC15.79■□□□□ 0.12
TRAV40A0A0B4J280 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC15.79■□□□□ 0.12
TRAV40A0A0B4J280 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC15.79■□□□□ 0.12
TRAV40A0A0B4J280 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
TRAV40A0A0B4J280 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
TRAV40A0A0B4J280 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
TRAV40A0A0B4J280 YAP1-201ENST00000282441 5386 ntAPPRIS P3 TSL 1 (best) BASIC15.78■□□□□ 0.12
TRAV40A0A0B4J280 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
TRAV40A0A0B4J280 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC15.78■□□□□ 0.12
TRAV40A0A0B4J280 LINC01465-201ENST00000408887 1940 ntBASIC15.78■□□□□ 0.12
TRAV40A0A0B4J280 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC15.78■□□□□ 0.12
TRAV40A0A0B4J280 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
TRAV40A0A0B4J280 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC15.78■□□□□ 0.12
TRAV40A0A0B4J280 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
TRAV40A0A0B4J280 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
TRAV40A0A0B4J280 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
TRAV40A0A0B4J280 BEX3-204ENST00000372645 913 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
TRAV40A0A0B4J280 MLLT10-205ENST00000377100 1136 ntTSL 2 BASIC15.78■□□□□ 0.12
TRAV40A0A0B4J280 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
TRAV40A0A0B4J280 TSPY1-201ENST00000423647 1171 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
TRAV40A0A0B4J280 SLC25A3P1-201ENST00000443844 931 ntBASIC15.78■□□□□ 0.12
TRAV40A0A0B4J280 NME1-207ENST00000480143 964 ntTSL 2 BASIC15.78■□□□□ 0.12
TRAV40A0A0B4J280 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC15.78■□□□□ 0.12
TRAV40A0A0B4J280 P4HB-223ENST00000576390 439 ntTSL 4 BASIC15.78■□□□□ 0.12
TRAV40A0A0B4J280 AP000692.2-201ENST00000608391 879 ntBASIC15.78■□□□□ 0.12
TRAV40A0A0B4J280 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC15.78■□□□□ 0.12
TRAV40A0A0B4J280 AC092865.7-201ENST00000641832 219 ntBASIC15.78■□□□□ 0.12
TRAV40A0A0B4J280 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
TRAV40A0A0B4J280 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
TRAV40A0A0B4J280 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC15.78■□□□□ 0.12
TRAV40A0A0B4J280 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
TRAV40A0A0B4J280 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
TRAV40A0A0B4J280 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC15.78■□□□□ 0.12
TRAV40A0A0B4J280 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC15.78■□□□□ 0.12
TRAV40A0A0B4J280 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
TRAV40A0A0B4J280 AC009237.14-201ENST00000609975 1594 ntBASIC15.78■□□□□ 0.12
TRAV40A0A0B4J280 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
TRAV40A0A0B4J280 LINC01006-201ENST00000333319 2292 ntBASIC15.78■□□□□ 0.12
TRAV40A0A0B4J280 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC15.78■□□□□ 0.12
TRAV40A0A0B4J280 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
TRAV40A0A0B4J280 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC15.77■□□□□ 0.12
TRAV40A0A0B4J280 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
TRAV40A0A0B4J280 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC15.77■□□□□ 0.12
TRAV40A0A0B4J280 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC15.77■□□□□ 0.12
TRAV40A0A0B4J280 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC15.77■□□□□ 0.12
TRAV40A0A0B4J280 AC099778.1-201ENST00000568593 1911 ntBASIC15.77■□□□□ 0.12
TRAV40A0A0B4J280 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC15.77■□□□□ 0.12
TRAV40A0A0B4J280 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC15.77■□□□□ 0.12
TRAV40A0A0B4J280 AL137013.1-201ENST00000432946 1228 ntBASIC15.77■□□□□ 0.12
TRAV40A0A0B4J280 MFAP1P1-201ENST00000442257 1255 ntBASIC15.77■□□□□ 0.12
TRAV40A0A0B4J280 Z85996.1-201ENST00000494644 937 ntBASIC15.77■□□□□ 0.12
TRAV40A0A0B4J280 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.12
TRAV40A0A0B4J280 AL160286.2-201ENST00000567150 934 ntBASIC15.77■□□□□ 0.12
TRAV40A0A0B4J280 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC15.77■□□□□ 0.12
TRAV40A0A0B4J280 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
TRAV40A0A0B4J280 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
TRAV40A0A0B4J280 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
TRAV40A0A0B4J280 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC15.77■□□□□ 0.11
TRAV40A0A0B4J280 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
TRAV40A0A0B4J280 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
TRAV40A0A0B4J280 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC15.77■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 20.7 ms