Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC26.14■■□□□ 1.77
SENP3-EIF4A1A0A087X0R7 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC26.14■■□□□ 1.77
SENP3-EIF4A1A0A087X0R7 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC26.13■■□□□ 1.77
SENP3-EIF4A1A0A087X0R7 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC26.13■■□□□ 1.77
SENP3-EIF4A1A0A087X0R7 Z82202.1-201ENST00000623446 1880 ntBASIC26.13■■□□□ 1.77
SENP3-EIF4A1A0A087X0R7 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC26.13■■□□□ 1.77
SENP3-EIF4A1A0A087X0R7 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC26.13■■□□□ 1.77
SENP3-EIF4A1A0A087X0R7 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC26.13■■□□□ 1.77
SENP3-EIF4A1A0A087X0R7 RER1-204ENST00000378518 522 ntTSL 3 BASIC26.13■■□□□ 1.77
SENP3-EIF4A1A0A087X0R7 AC004889.1-203ENST00000464929 819 ntTSL 5 BASIC26.13■■□□□ 1.77
SENP3-EIF4A1A0A087X0R7 OR2A1-AS1-207ENST00000486094 819 ntBASIC26.13■■□□□ 1.77
SENP3-EIF4A1A0A087X0R7 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC26.13■■□□□ 1.77
SENP3-EIF4A1A0A087X0R7 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC26.13■■□□□ 1.77
SENP3-EIF4A1A0A087X0R7 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC26.13■■□□□ 1.77
SENP3-EIF4A1A0A087X0R7 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC26.13■■□□□ 1.77
SENP3-EIF4A1A0A087X0R7 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC26.13■■□□□ 1.77
SENP3-EIF4A1A0A087X0R7 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC26.13■■□□□ 1.77
SENP3-EIF4A1A0A087X0R7 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC26.13■■□□□ 1.77
SENP3-EIF4A1A0A087X0R7 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC26.13■■□□□ 1.77
SENP3-EIF4A1A0A087X0R7 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC26.13■■□□□ 1.77
SENP3-EIF4A1A0A087X0R7 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC26.13■■□□□ 1.77
SENP3-EIF4A1A0A087X0R7 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC26.13■■□□□ 1.77
SENP3-EIF4A1A0A087X0R7 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC26.13■■□□□ 1.77
SENP3-EIF4A1A0A087X0R7 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC26.13■■□□□ 1.77
SENP3-EIF4A1A0A087X0R7 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC26.12■■□□□ 1.77
SENP3-EIF4A1A0A087X0R7 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC26.12■■□□□ 1.77
SENP3-EIF4A1A0A087X0R7 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC26.12■■□□□ 1.77
SENP3-EIF4A1A0A087X0R7 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC26.12■■□□□ 1.77
SENP3-EIF4A1A0A087X0R7 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
SENP3-EIF4A1A0A087X0R7 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
SENP3-EIF4A1A0A087X0R7 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC26.12■■□□□ 1.77
SENP3-EIF4A1A0A087X0R7 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC26.12■■□□□ 1.77
SENP3-EIF4A1A0A087X0R7 TACO1-201ENST00000258975 1469 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
SENP3-EIF4A1A0A087X0R7 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC26.12■■□□□ 1.77
SENP3-EIF4A1A0A087X0R7 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
SENP3-EIF4A1A0A087X0R7 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC26.12■■□□□ 1.77
SENP3-EIF4A1A0A087X0R7 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC26.12■■□□□ 1.77
SENP3-EIF4A1A0A087X0R7 TSPY7P-201ENST00000431358 1114 ntBASIC26.12■■□□□ 1.77
SENP3-EIF4A1A0A087X0R7 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC26.12■■□□□ 1.77
SENP3-EIF4A1A0A087X0R7 AC098818.2-201ENST00000564925 2320 ntBASIC26.12■■□□□ 1.77
SENP3-EIF4A1A0A087X0R7 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC26.12■■□□□ 1.77
SENP3-EIF4A1A0A087X0R7 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC26.12■■□□□ 1.77
SENP3-EIF4A1A0A087X0R7 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC26.12■■□□□ 1.77
SENP3-EIF4A1A0A087X0R7 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
SENP3-EIF4A1A0A087X0R7 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
SENP3-EIF4A1A0A087X0R7 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC26.11■■□□□ 1.77
SENP3-EIF4A1A0A087X0R7 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC26.11■■□□□ 1.77
SENP3-EIF4A1A0A087X0R7 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC26.11■■□□□ 1.77
SENP3-EIF4A1A0A087X0R7 MRPS26-201ENST00000380325 1127 ntAPPRIS P1 TSL 1 (best) BASIC26.11■■□□□ 1.77
SENP3-EIF4A1A0A087X0R7 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC26.11■■□□□ 1.77
SENP3-EIF4A1A0A087X0R7 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC26.11■■□□□ 1.77
SENP3-EIF4A1A0A087X0R7 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC26.11■■□□□ 1.77
SENP3-EIF4A1A0A087X0R7 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC26.11■■□□□ 1.77
SENP3-EIF4A1A0A087X0R7 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC26.11■■□□□ 1.77
SENP3-EIF4A1A0A087X0R7 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC26.11■■□□□ 1.77
SENP3-EIF4A1A0A087X0R7 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC26.11■■□□□ 1.77
SENP3-EIF4A1A0A087X0R7 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC26.11■■□□□ 1.77
SENP3-EIF4A1A0A087X0R7 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC26.1■■□□□ 1.77
SENP3-EIF4A1A0A087X0R7 GOLGA2P11-201ENST00000562660 1621 ntBASIC26.1■■□□□ 1.77
SENP3-EIF4A1A0A087X0R7 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC26.1■■□□□ 1.77
SENP3-EIF4A1A0A087X0R7 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC26.1■■□□□ 1.77
SENP3-EIF4A1A0A087X0R7 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC26.1■■□□□ 1.77
SENP3-EIF4A1A0A087X0R7 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC26.1■■□□□ 1.77
SENP3-EIF4A1A0A087X0R7 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC26.1■■□□□ 1.77
SENP3-EIF4A1A0A087X0R7 CRAT-202ENST00000393384 973 ntTSL 2 BASIC26.1■■□□□ 1.77
SENP3-EIF4A1A0A087X0R7 AC140504.1-202ENST00000568222 652 ntTSL 5 BASIC26.1■■□□□ 1.77
SENP3-EIF4A1A0A087X0R7 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC26.1■■□□□ 1.77
SENP3-EIF4A1A0A087X0R7 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC26.1■■□□□ 1.77
SENP3-EIF4A1A0A087X0R7 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC26.1■■□□□ 1.77
SENP3-EIF4A1A0A087X0R7 AC009237.14-201ENST00000609975 1594 ntBASIC26.1■■□□□ 1.77
SENP3-EIF4A1A0A087X0R7 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC26.1■■□□□ 1.77
SENP3-EIF4A1A0A087X0R7 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC26.1■■□□□ 1.77
SENP3-EIF4A1A0A087X0R7 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC26.1■■□□□ 1.77
SENP3-EIF4A1A0A087X0R7 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC26.1■■□□□ 1.77
SENP3-EIF4A1A0A087X0R7 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC26.1■■□□□ 1.77
SENP3-EIF4A1A0A087X0R7 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC26.1■■□□□ 1.77
SENP3-EIF4A1A0A087X0R7 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC26.1■■□□□ 1.77
SENP3-EIF4A1A0A087X0R7 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC26.1■■□□□ 1.77
SENP3-EIF4A1A0A087X0R7 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC26.1■■□□□ 1.77
SENP3-EIF4A1A0A087X0R7 EPOR-201ENST00000222139 2411 ntAPPRIS P1 TSL 1 (best) BASIC26.09■■□□□ 1.77
SENP3-EIF4A1A0A087X0R7 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC26.09■■□□□ 1.77
SENP3-EIF4A1A0A087X0R7 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC26.09■■□□□ 1.77
SENP3-EIF4A1A0A087X0R7 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC26.09■■□□□ 1.77
SENP3-EIF4A1A0A087X0R7 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC26.09■■□□□ 1.77
SENP3-EIF4A1A0A087X0R7 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC26.09■■□□□ 1.77
SENP3-EIF4A1A0A087X0R7 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC26.09■■□□□ 1.77
SENP3-EIF4A1A0A087X0R7 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC26.09■■□□□ 1.77
SENP3-EIF4A1A0A087X0R7 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC26.09■■□□□ 1.77
SENP3-EIF4A1A0A087X0R7 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC26.09■■□□□ 1.77
SENP3-EIF4A1A0A087X0R7 PLEKHB1-216ENST00000543085 632 ntTSL 3 BASIC26.09■■□□□ 1.77
SENP3-EIF4A1A0A087X0R7 PNN-205ENST00000556530 601 ntTSL 2 BASIC26.09■■□□□ 1.77
SENP3-EIF4A1A0A087X0R7 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC26.09■■□□□ 1.77
SENP3-EIF4A1A0A087X0R7 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC26.09■■□□□ 1.77
SENP3-EIF4A1A0A087X0R7 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC26.09■■□□□ 1.77
SENP3-EIF4A1A0A087X0R7 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC26.09■■□□□ 1.77
SENP3-EIF4A1A0A087X0R7 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC26.09■■□□□ 1.77
SENP3-EIF4A1A0A087X0R7 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC26.09■■□□□ 1.77
SENP3-EIF4A1A0A087X0R7 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC26.09■■□□□ 1.77
SENP3-EIF4A1A0A087X0R7 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC26.09■■□□□ 1.77
SENP3-EIF4A1A0A087X0R7 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC26.09■■□□□ 1.77
Retrieved 100 of 98,524 protein–RNA pairs in 28.6 ms