Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 MRPL35P4-201ENST00000453682 566 ntBASIC4.93□□□□□ -1.62
VPS28Q9UK41 AL356289.2-201ENST00000455238 292 ntTSL 5 BASIC4.93□□□□□ -1.62
VPS28Q9UK41 RPS5P7-201ENST00000456664 608 ntBASIC4.93□□□□□ -1.62
VPS28Q9UK41 IGLV2-34-201ENST00000490007 283 ntBASIC4.93□□□□□ -1.62
VPS28Q9UK41 RN7SL558P-201ENST00000497468 299 ntBASIC4.93□□□□□ -1.62
VPS28Q9UK41 AC008696.2-201ENST00000503323 825 ntTSL 3 BASIC4.93□□□□□ -1.62
VPS28Q9UK41 AC005699.1-205ENST00000510639 427 ntTSL 2 BASIC4.93□□□□□ -1.62
VPS28Q9UK41 RNU6-709P-201ENST00000517257 104 ntBASIC4.93□□□□□ -1.62
VPS28Q9UK41 CDH12P4-201ENST00000517835 295 ntBASIC4.93□□□□□ -1.62
VPS28Q9UK41 CDH12P3-201ENST00000517935 295 ntBASIC4.93□□□□□ -1.62
VPS28Q9UK41 CDH12P1-201ENST00000518435 295 ntBASIC4.93□□□□□ -1.62
VPS28Q9UK41 LY96-202ENST00000518893 430 ntTSL 3 BASIC4.93□□□□□ -1.62
VPS28Q9UK41 TRAPPC2-208ENST00000519885 561 ntTSL 3 BASIC4.93□□□□□ -1.62
VPS28Q9UK41 AP003102.1-201ENST00000525638 661 ntBASIC4.93□□□□□ -1.62
VPS28Q9UK41 AC087894.1-201ENST00000538359 518 ntBASIC4.93□□□□□ -1.62
VPS28Q9UK41 AC011595.3-201ENST00000546699 632 ntTSL 3 BASIC4.93□□□□□ -1.62
VPS28Q9UK41 DNAL1-205ENST00000554339 548 ntTSL 5 BASIC4.93□□□□□ -1.62
VPS28Q9UK41 AC023824.3-201ENST00000569003 562 ntBASIC4.93□□□□□ -1.62
VPS28Q9UK41 AC087501.4-201ENST00000574460 235 ntTSL 5 BASIC4.93□□□□□ -1.62
VPS28Q9UK41 MIR4700-201ENST00000578311 74 ntBASIC4.93□□□□□ -1.62
VPS28Q9UK41 AC005154.1-213ENST00000578572 445 ntTSL 3 BASIC4.93□□□□□ -1.62
VPS28Q9UK41 AC126365.2-201ENST00000580630 379 ntBASIC4.93□□□□□ -1.62
VPS28Q9UK41 VN1R88P-201ENST00000596787 292 ntBASIC4.93□□□□□ -1.62
VPS28Q9UK41 AC069304.3-201ENST00000603938 1084 ntBASIC4.93□□□□□ -1.62
VPS28Q9UK41 AC087283.1-201ENST00000604029 1074 ntBASIC4.93□□□□□ -1.62
VPS28Q9UK41 BNIP3P4-201ENST00000604946 565 ntBASIC4.93□□□□□ -1.62
VPS28Q9UK41 AL161616.1-201ENST00000611867 286 ntBASIC4.93□□□□□ -1.62
VPS28Q9UK41 DARS-AS1-230ENST00000631306 530 ntTSL 5 BASIC4.93□□□□□ -1.62
VPS28Q9UK41 LINC01289-201ENST00000519550 3712 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
VPS28Q9UK41 AL049555.1-201ENST00000562834 1933 ntBASIC4.93□□□□□ -1.62
VPS28Q9UK41 AC234781.1-202ENST00000412436 1329 ntTSL 5 BASIC4.93□□□□□ -1.62
VPS28Q9UK41 GAPT-201ENST00000318469 2119 ntAPPRIS P1 BASIC4.93□□□□□ -1.62
VPS28Q9UK41 ANK2-202ENST00000357077 14196 ntAPPRIS P3 TSL 1 (best) BASIC4.93□□□□□ -1.62
VPS28Q9UK41 RALGAPA1-204ENST00000553892 6271 ntTSL 5 BASIC4.93□□□□□ -1.62
VPS28Q9UK41 TMEM30A-202ENST00000370050 3775 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
VPS28Q9UK41 PUS7L-203ENST00000431332 1873 ntTSL 2 BASIC4.92□□□□□ -1.62
VPS28Q9UK41 INTS6-220ENST00000497989 3022 ntTSL 2 BASIC4.92□□□□□ -1.62
VPS28Q9UK41 TECRL-201ENST00000381210 3573 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
VPS28Q9UK41 AC092329.3-201ENST00000611392 1904 ntAPPRIS P1 TSL 5 BASIC4.92□□□□□ -1.62
VPS28Q9UK41 LIMA1-214ENST00000552783 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC4.92□□□□□ -1.62
VPS28Q9UK41 OBSCN-210ENST00000570156 26925 ntAPPRIS P1 TSL 5 BASIC4.92□□□□□ -1.62
VPS28Q9UK41 RNU1-87P-201ENST00000363727 170 ntBASIC4.92□□□□□ -1.62
VPS28Q9UK41 R3HCC1L-204ENST00000370586 941 ntTSL 3 BASIC4.92□□□□□ -1.62
VPS28Q9UK41 HNRNPDP2-201ENST00000406475 478 ntBASIC4.92□□□□□ -1.62
VPS28Q9UK41 LINC00993-201ENST00000420453 540 ntBASIC4.92□□□□□ -1.62
VPS28Q9UK41 AL590723.1-201ENST00000426030 629 ntTSL 5 BASIC4.92□□□□□ -1.62
VPS28Q9UK41 AC013262.1-201ENST00000426710 252 ntBASIC4.92□□□□□ -1.62
VPS28Q9UK41 RPL7P4-203ENST00000430239 730 ntBASIC4.92□□□□□ -1.62
VPS28Q9UK41 AC023347.2-201ENST00000433994 462 ntBASIC4.92□□□□□ -1.62
VPS28Q9UK41 AC099063.1-201ENST00000437128 324 ntTSL 5 BASIC4.92□□□□□ -1.62
VPS28Q9UK41 AC002542.1-201ENST00000440683 193 ntBASIC4.92□□□□□ -1.62
VPS28Q9UK41 BX248409.1-201ENST00000455497 255 ntBASIC4.92□□□□□ -1.62
VPS28Q9UK41 AC006967.1-201ENST00000467608 589 ntBASIC4.92□□□□□ -1.62
VPS28Q9UK41 AC104689.1-201ENST00000473356 768 ntBASIC4.92□□□□□ -1.62
VPS28Q9UK41 AC104971.1-201ENST00000495117 578 ntBASIC4.92□□□□□ -1.62
VPS28Q9UK41 LINC01030-201ENST00000517505 738 ntTSL 3 BASIC4.92□□□□□ -1.62
VPS28Q9UK41 AC022790.1-201ENST00000522872 204 ntBASIC4.92□□□□□ -1.62
VPS28Q9UK41 AL442163.2-201ENST00000553912 710 ntBASIC4.92□□□□□ -1.62
VPS28Q9UK41 AC015660.2-201ENST00000561362 323 ntTSL 3 BASIC4.92□□□□□ -1.62
VPS28Q9UK41 LINC00254-201ENST00000563416 662 ntTSL 3 BASIC4.92□□□□□ -1.62
VPS28Q9UK41 AC099518.4-204ENST00000567047 380 ntTSL 2 BASIC4.92□□□□□ -1.62
VPS28Q9UK41 AJ003147.1-201ENST00000576762 454 ntTSL 3 BASIC4.92□□□□□ -1.62
VPS28Q9UK41 AC002091.1-201ENST00000578788 557 ntTSL 2 BASIC4.92□□□□□ -1.62
VPS28Q9UK41 RPL26-204ENST00000578812 1002 ntTSL 2 BASIC4.92□□□□□ -1.62
VPS28Q9UK41 AP005433.1-201ENST00000582939 620 ntTSL 2 BASIC4.92□□□□□ -1.62
VPS28Q9UK41 AL161896.1-201ENST00000597248 508 ntTSL 4 BASIC4.92□□□□□ -1.62
VPS28Q9UK41 AC100781.1-203ENST00000598549 399 ntTSL 5 BASIC4.92□□□□□ -1.62
VPS28Q9UK41 AC015849.3-201ENST00000603981 488 ntTSL 5 BASIC4.92□□□□□ -1.62
VPS28Q9UK41 BNIP3P31-201ENST00000604515 566 ntBASIC4.92□□□□□ -1.62
VPS28Q9UK41 AC017076.1-201ENST00000607613 578 ntBASIC4.92□□□□□ -1.62
VPS28Q9UK41 AC005156.1-201ENST00000613371 573 ntBASIC4.92□□□□□ -1.62
VPS28Q9UK41 C8orf59-213ENST00000619594 859 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
VPS28Q9UK41 AP003476.1-201ENST00000623984 516 ntBASIC4.92□□□□□ -1.62
VPS28Q9UK41 NAIP-210ENST00000523981 4543 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
VPS28Q9UK41 PTPN22-201ENST00000359785 3654 ntAPPRIS P2 TSL 1 (best) BASIC4.92□□□□□ -1.62
VPS28Q9UK41 SPINK5-201ENST00000256084 3535 ntAPPRIS P3 TSL 1 (best) BASIC4.92□□□□□ -1.62
VPS28Q9UK41 SPEF2-216ENST00000637569 7350 ntAPPRIS ALT2 TSL 5 BASIC4.92□□□□□ -1.62
VPS28Q9UK41 GABRG2-217ENST00000639384 5360 ntTSL 5 BASIC4.92□□□□□ -1.62
VPS28Q9UK41 MTUS1-203ENST00000381861 3996 ntAPPRIS P4 TSL 2 BASIC4.92□□□□□ -1.62
VPS28Q9UK41 Z95327.2-201ENST00000414579 1873 ntBASIC4.92□□□□□ -1.62
VPS28Q9UK41 C1orf112-202ENST00000359326 4002 ntAPPRIS P3 TSL 1 (best) BASIC4.92□□□□□ -1.62
VPS28Q9UK41 TLK1P1-201ENST00000456760 2440 ntBASIC4.92□□□□□ -1.62
VPS28Q9UK41 VIP-201ENST00000367243 1581 ntAPPRIS ALT1 TSL 1 (best) BASIC4.91□□□□□ -1.62
VPS28Q9UK41 HMCN1-201ENST00000271588 18208 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
VPS28Q9UK41 DAZ1-205ENST00000540248 3268 ntTSL 5 BASIC4.91□□□□□ -1.62
VPS28Q9UK41 ATF7IP2-202ENST00000356427 3463 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
VPS28Q9UK41 OR10Z1-202ENST00000641002 6323 ntAPPRIS P1 BASIC4.91□□□□□ -1.62
VPS28Q9UK41 OR6Y1-202ENST00000641282 3702 ntAPPRIS P1 BASIC4.91□□□□□ -1.62
VPS28Q9UK41 PLCZ1-206ENST00000538330 1612 ntTSL 2 BASIC4.91□□□□□ -1.62
VPS28Q9UK41 GPATCH2L-214ENST00000621494 12396 ntAPPRIS P1 TSL 2 BASIC4.91□□□□□ -1.62
VPS28Q9UK41 FANCD2-202ENST00000383807 5102 ntAPPRIS ALT2 TSL 1 (best) BASIC4.91□□□□□ -1.62
VPS28Q9UK41 SMAD4-202ENST00000398417 8495 ntAPPRIS P1 TSL 5 BASIC4.91□□□□□ -1.62
VPS28Q9UK41 LINGO2-201ENST00000308675 3031 ntAPPRIS P1 TSL 5 BASIC4.91□□□□□ -1.62
VPS28Q9UK41 ARHGEF12-202ENST00000397843 9660 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
VPS28Q9UK41 ADNP-201ENST00000349014 5963 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
VPS28Q9UK41 PPBP-201ENST00000296028 715 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
VPS28Q9UK41 AC234772.1-201ENST00000377927 937 ntBASIC4.91□□□□□ -1.62
VPS28Q9UK41 U6.112-201ENST00000384129 70 ntBASIC4.91□□□□□ -1.62
VPS28Q9UK41 RN7SKP199-201ENST00000410325 305 ntBASIC4.91□□□□□ -1.62
VPS28Q9UK41 BX510359.2-201ENST00000417920 305 ntBASIC4.91□□□□□ -1.62
Retrieved 100 of 98,524 protein–RNA pairs in 140.7 ms