Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 CCNB2P1-201ENST00000399411 1150 ntBASIC4.39□□□□□ -1.71
VPS35Q96QK1 HDGFP1-201ENST00000405943 252 ntBASIC4.39□□□□□ -1.71
VPS35Q96QK1 CEACAMP8-201ENST00000413902 580 ntBASIC4.39□□□□□ -1.71
VPS35Q96QK1 TRAPPC2P10-201ENST00000415662 323 ntBASIC4.39□□□□□ -1.71
VPS35Q96QK1 AL807761.1-201ENST00000417622 171 ntBASIC4.39□□□□□ -1.71
VPS35Q96QK1 AC004552.1-201ENST00000419089 348 ntBASIC4.39□□□□□ -1.71
VPS35Q96QK1 AC009480.2-201ENST00000422916 432 ntBASIC4.39□□□□□ -1.71
VPS35Q96QK1 MOBP-206ENST00000428261 561 ntAPPRIS ALT2 TSL 4 BASIC4.39□□□□□ -1.71
VPS35Q96QK1 AL451070.1-201ENST00000430143 439 ntTSL 5 BASIC4.39□□□□□ -1.71
VPS35Q96QK1 AC011998.1-201ENST00000433403 117 ntBASIC4.39□□□□□ -1.71
VPS35Q96QK1 AC076966.1-201ENST00000435560 351 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
VPS35Q96QK1 GPC6-AS1-201ENST00000436329 698 ntTSL 5 BASIC4.39□□□□□ -1.71
VPS35Q96QK1 TAB3-AS2-201ENST00000445240 292 ntTSL 5 BASIC4.39□□□□□ -1.71
VPS35Q96QK1 AL354771.1-201ENST00000452178 602 ntTSL 5 BASIC4.39□□□□□ -1.71
VPS35Q96QK1 HMGB1P26-201ENST00000452520 628 ntBASIC4.39□□□□□ -1.71
VPS35Q96QK1 AC009495.2-201ENST00000457108 506 ntTSL 2 BASIC4.39□□□□□ -1.71
VPS35Q96QK1 RPS27AP17-201ENST00000463344 455 ntBASIC4.39□□□□□ -1.71
VPS35Q96QK1 RPS26P3-201ENST00000470205 348 ntBASIC4.39□□□□□ -1.71
VPS35Q96QK1 RPL23AP2-201ENST00000471227 466 ntBASIC4.39□□□□□ -1.71
VPS35Q96QK1 AC090543.2-201ENST00000483963 348 ntBASIC4.39□□□□□ -1.71
VPS35Q96QK1 AC004057.1-201ENST00000485827 348 ntBASIC4.39□□□□□ -1.71
VPS35Q96QK1 AC107398.1-201ENST00000486904 505 ntBASIC4.39□□□□□ -1.71
VPS35Q96QK1 RPS27AP16-201ENST00000492222 470 ntBASIC4.39□□□□□ -1.71
VPS35Q96QK1 RN7SL810P-201ENST00000493031 276 ntBASIC4.39□□□□□ -1.71
VPS35Q96QK1 RN7SL812P-201ENST00000493791 279 ntBASIC4.39□□□□□ -1.71
VPS35Q96QK1 FOXD1-AS1-201ENST00000514661 424 ntTSL 3 BASIC4.39□□□□□ -1.71
VPS35Q96QK1 AC087379.1-201ENST00000524613 993 ntTSL 5 BASIC4.39□□□□□ -1.71
VPS35Q96QK1 OR8G5-201ENST00000524943 1041 ntBASIC4.39□□□□□ -1.71
VPS35Q96QK1 TMEM106C-220ENST00000552561 810 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
VPS35Q96QK1 AC021483.2-201ENST00000567415 758 ntBASIC4.39□□□□□ -1.71
VPS35Q96QK1 AC005695.2-201ENST00000579641 259 ntTSL 3 BASIC4.39□□□□□ -1.71
VPS35Q96QK1 AC026620.1-201ENST00000584815 326 ntTSL 3 BASIC4.39□□□□□ -1.71
VPS35Q96QK1 ELOCP28-201ENST00000590044 317 ntBASIC4.39□□□□□ -1.71
VPS35Q96QK1 LINC00907-208ENST00000593051 1092 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
VPS35Q96QK1 PSMA6P4-201ENST00000603247 718 ntBASIC4.39□□□□□ -1.71
VPS35Q96QK1 AC008035.1-201ENST00000607353 448 ntTSL 3 BASIC4.39□□□□□ -1.71
VPS35Q96QK1 AC015802.5-201ENST00000607478 399 ntBASIC4.39□□□□□ -1.71
VPS35Q96QK1 AC091979.2-201ENST00000607514 214 ntBASIC4.39□□□□□ -1.71
VPS35Q96QK1 AC239803.2-201ENST00000610161 430 ntBASIC4.39□□□□□ -1.71
VPS35Q96QK1 MIR6748-201ENST00000610433 71 ntBASIC4.39□□□□□ -1.71
VPS35Q96QK1 AC245452.5-201ENST00000620649 780 ntTSL 3 BASIC4.39□□□□□ -1.71
VPS35Q96QK1 PTPN22-201ENST00000359785 3654 ntAPPRIS P2 TSL 1 (best) BASIC4.39□□□□□ -1.71
VPS35Q96QK1 OR8J3-203ENST00000641913 3047 ntAPPRIS P1 BASIC4.39□□□□□ -1.71
VPS35Q96QK1 MTTP-201ENST00000265517 4037 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
VPS35Q96QK1 TLR3-201ENST00000296795 6015 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
VPS35Q96QK1 PPP1R9A-205ENST00000424654 4058 ntTSL 5 BASIC4.39□□□□□ -1.71
VPS35Q96QK1 SNCA-AS1-201ENST00000501215 2646 ntTSL 2 BASIC4.39□□□□□ -1.71
VPS35Q96QK1 TAB3-204ENST00000378932 3698 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
VPS35Q96QK1 OR8D1-202ENST00000641015 8286 ntAPPRIS P1 BASIC4.39□□□□□ -1.71
VPS35Q96QK1 OR8D1-203ENST00000641897 8285 ntAPPRIS P1 BASIC4.39□□□□□ -1.71
VPS35Q96QK1 UNC13C-201ENST00000260323 12946 ntAPPRIS P1 TSL 5 BASIC4.38□□□□□ -1.71
VPS35Q96QK1 OR2L13-201ENST00000358120 1942 ntAPPRIS P1 BASIC4.38□□□□□ -1.71
VPS35Q96QK1 PHKBP1-201ENST00000450951 1951 ntBASIC4.38□□□□□ -1.71
VPS35Q96QK1 CARF-208ENST00000428585 2513 ntTSL 2 BASIC4.38□□□□□ -1.71
VPS35Q96QK1 AL445437.1-201ENST00000623157 3087 ntBASIC4.38□□□□□ -1.71
VPS35Q96QK1 AC093311.1-201ENST00000506586 2021 ntBASIC4.38□□□□□ -1.71
VPS35Q96QK1 PHF20L1-210ENST00000395390 5900 ntTSL 5 BASIC4.38□□□□□ -1.71
VPS35Q96QK1 FTO-203ENST00000460382 1517 ntTSL 5 BASIC4.38□□□□□ -1.71
VPS35Q96QK1 AC090971.4-201ENST00000560291 1800 ntBASIC4.38□□□□□ -1.71
VPS35Q96QK1 AC139713.2-214ENST00000642059 1811 ntBASIC4.38□□□□□ -1.71
VPS35Q96QK1 CLEC7A-202ENST00000304084 1130 ntAPPRIS ALT1 TSL 1 (best) BASIC4.38□□□□□ -1.71
VPS35Q96QK1 RNA5SP372-201ENST00000390836 115 ntBASIC4.38□□□□□ -1.71
VPS35Q96QK1 SF3B1-202ENST00000409915 600 ntTSL 2 BASIC4.38□□□□□ -1.71
VPS35Q96QK1 RPL12P34-201ENST00000424532 479 ntBASIC4.38□□□□□ -1.71
VPS35Q96QK1 AC023141.6-201ENST00000429418 337 ntBASIC4.38□□□□□ -1.71
VPS35Q96QK1 MTND4LP14-201ENST00000429447 288 ntBASIC4.38□□□□□ -1.71
VPS35Q96QK1 CCNB1IP1P2-201ENST00000432876 818 ntBASIC4.38□□□□□ -1.71
VPS35Q96QK1 FTH1P16-201ENST00000435241 552 ntBASIC4.38□□□□□ -1.71
VPS35Q96QK1 UBE2V1P3-201ENST00000439651 417 ntBASIC4.38□□□□□ -1.71
VPS35Q96QK1 CD200R1-203ENST00000440122 847 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
VPS35Q96QK1 RN7SL817P-201ENST00000480777 288 ntBASIC4.38□□□□□ -1.71
VPS35Q96QK1 AC013356.1-201ENST00000489027 564 ntBASIC4.38□□□□□ -1.71
VPS35Q96QK1 C1orf143-202ENST00000491260 813 ntTSL 3 BASIC4.38□□□□□ -1.71
VPS35Q96QK1 AC025674.1-201ENST00000507074 324 ntBASIC4.38□□□□□ -1.71
VPS35Q96QK1 AC093297.2-204ENST00000508945 295 ntTSL 3 BASIC4.38□□□□□ -1.71
VPS35Q96QK1 RNU6-362P-201ENST00000516736 90 ntBASIC4.38□□□□□ -1.71
VPS35Q96QK1 AC026616.1-201ENST00000523157 525 ntBASIC4.38□□□□□ -1.71
VPS35Q96QK1 AC099520.1-205ENST00000524083 316 ntTSL 3 BASIC4.38□□□□□ -1.71
VPS35Q96QK1 LINC02326-201ENST00000552028 540 ntTSL 3 BASIC4.38□□□□□ -1.71
VPS35Q96QK1 AC112693.1-201ENST00000555297 682 ntTSL 3 BASIC4.38□□□□□ -1.71
VPS35Q96QK1 AL049870.4-201ENST00000555741 486 ntBASIC4.38□□□□□ -1.71
VPS35Q96QK1 RPL23AP97-201ENST00000568955 471 ntBASIC4.38□□□□□ -1.71
VPS35Q96QK1 LINC00397-202ENST00000606785 409 ntTSL 5 BASIC4.38□□□□□ -1.71
VPS35Q96QK1 DARS-AS1-221ENST00000608471 532 ntTSL 5 BASIC4.38□□□□□ -1.71
VPS35Q96QK1 uc_338.13-201ENST00000618243 179 ntBASIC4.38□□□□□ -1.71
VPS35Q96QK1 VPS29-212ENST00000621131 1124 ntTSL 3 BASIC4.38□□□□□ -1.71
VPS35Q96QK1 Metazoa_SRP.193-201ENST00000622007 277 ntBASIC4.38□□□□□ -1.71
VPS35Q96QK1 AC007342.8-201ENST00000623278 678 ntBASIC4.38□□□□□ -1.71
VPS35Q96QK1 KIAA1524-208ENST00000625495 147 ntTSL 5 BASIC4.38□□□□□ -1.71
VPS35Q96QK1 ZNF808-201ENST00000359798 3600 ntAPPRIS P1 TSL 5 BASIC4.38□□□□□ -1.71
VPS35Q96QK1 MARCH1-201ENST00000274056 5367 ntAPPRIS P1 TSL 4 BASIC4.38□□□□□ -1.71
VPS35Q96QK1 MECOM-219ENST00000628990 4835 ntAPPRIS P3 TSL 1 (best) BASIC4.38□□□□□ -1.71
VPS35Q96QK1 DLG1-217ENST00000452595 3053 ntTSL 2 BASIC4.38□□□□□ -1.71
VPS35Q96QK1 NEDD4-201ENST00000338963 7019 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
VPS35Q96QK1 MACF1-231ENST00000564288 24828 ntAPPRIS ALT2 TSL 5 BASIC4.38□□□□□ -1.71
VPS35Q96QK1 OR5M3-202ENST00000641993 1400 ntAPPRIS P1 BASIC4.38□□□□□ -1.71
VPS35Q96QK1 TENM1-201ENST00000371130 12875 ntAPPRIS P3 TSL 1 (best) BASIC4.37□□□□□ -1.71
VPS35Q96QK1 TMEM30A-202ENST00000370050 3775 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
VPS35Q96QK1 AK9-202ENST00000355283 2499 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
VPS35Q96QK1 ABI3BP-206ENST00000471714 6783 ntAPPRIS ALT2 TSL 5 BASIC4.37□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 76.1 ms