Protein–RNA interactions for Protein: P02462

COL4A1, Collagen alpha-1(IV) chain, humanhuman

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1P02462 LINC00534-201ENST00000517400 793 ntTSL 2 BASIC4.69□□□□□ -1.66
COL4A1P02462 LINC01269-201ENST00000553682 602 ntTSL 4 BASIC4.69□□□□□ -1.66
COL4A1P02462 AC067968.2-201ENST00000592583 566 ntTSL 4 BASIC4.69□□□□□ -1.66
COL4A1P02462 LAMTOR5-AS1-217ENST00000608152 407 ntTSL 5 BASIC4.69□□□□□ -1.66
COL4A1P02462 LAMTOR5-AS1-227ENST00000609653 457 ntTSL 2 BASIC4.69□□□□□ -1.66
COL4A1P02462 VPS13C-204ENST00000395898 11012 ntAPPRIS ALT2 TSL 1 (best) BASIC4.69□□□□□ -1.66
COL4A1P02462 AC019197.1-201ENST00000638199 3611 ntTSL 5 BASIC4.69□□□□□ -1.66
COL4A1P02462 RYR2-201ENST00000360064 14850 ntAPPRIS ALT2 TSL 5 BASIC4.69□□□□□ -1.66
COL4A1P02462 AL390036.1-202ENST00000634635 2439 ntTSL 5 BASIC4.69□□□□□ -1.66
COL4A1P02462 STEAP2-203ENST00000394622 6612 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
COL4A1P02462 TANC2-202ENST00000424789 11721 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
COL4A1P02462 PRB2-201ENST00000389362 1429 ntAPPRIS P2 TSL 5 BASIC4.69□□□□□ -1.66
COL4A1P02462 GABRG2-203ENST00000414552 3927 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
COL4A1P02462 LRRTM4-201ENST00000409088 3616 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
COL4A1P02462 CMYA5-201ENST00000446378 12847 ntAPPRIS P1 TSL 5 BASIC4.68□□□□□ -1.66
COL4A1P02462 PTP4A1-205ENST00000626021 2203 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
COL4A1P02462 IL6ST-212ENST00000522633 1878 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
COL4A1P02462 HCFC2P1-201ENST00000392864 1592 ntBASIC4.68□□□□□ -1.66
COL4A1P02462 FBXO8-205ENST00000615392 1591 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
COL4A1P02462 PTMAP5-201ENST00000393073 333 ntBASIC4.68□□□□□ -1.66
COL4A1P02462 SNORA3C-201ENST00000408792 125 ntBASIC4.68□□□□□ -1.66
COL4A1P02462 DYNLL1P7-201ENST00000429273 258 ntBASIC4.68□□□□□ -1.66
COL4A1P02462 HSPD1P21-201ENST00000436541 245 ntBASIC4.68□□□□□ -1.66
COL4A1P02462 PLCE1-AS2-205ENST00000453183 427 ntTSL 5 BASIC4.68□□□□□ -1.66
COL4A1P02462 AC084198.1-201ENST00000477747 402 ntBASIC4.68□□□□□ -1.66
COL4A1P02462 AC092666.1-202ENST00000493400 442 ntTSL 2 BASIC4.68□□□□□ -1.66
COL4A1P02462 AC016553.1-201ENST00000513283 249 ntTSL 3 BASIC4.68□□□□□ -1.66
COL4A1P02462 LINC00508-201ENST00000538901 194 ntTSL 5 BASIC4.68□□□□□ -1.66
COL4A1P02462 LINC02520-201ENST00000570443 537 ntTSL 4 BASIC4.68□□□□□ -1.66
COL4A1P02462 U3.45-201ENST00000607547 219 ntBASIC4.68□□□□□ -1.66
COL4A1P02462 CLCA3P-202ENST00000466454 3412 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
COL4A1P02462 ZMYND11-217ENST00000627286 3914 ntTSL 5 BASIC4.68□□□□□ -1.66
COL4A1P02462 ZNF266-203ENST00000588933 3293 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
COL4A1P02462 ING3-201ENST00000315870 3777 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
COL4A1P02462 WRN-201ENST00000298139 5215 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
COL4A1P02462 PTPN22-207ENST00000528414 3424 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
COL4A1P02462 TNFAIP8-203ENST00000415806 1990 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
COL4A1P02462 RHOT1-204ENST00000394692 2960 ntTSL 2 BASIC4.68□□□□□ -1.66
COL4A1P02462 VCAN-203ENST00000343200 9455 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
COL4A1P02462 STON1-GTF2A1L-202ENST00000394754 3824 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
COL4A1P02462 TLR3-201ENST00000296795 6015 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
COL4A1P02462 VDAC2P1-201ENST00000399358 958 ntBASIC4.67□□□□□ -1.66
COL4A1P02462 AC062031.1-201ENST00000414967 747 ntTSL 3 BASIC4.67□□□□□ -1.66
COL4A1P02462 SNORA71B-202ENST00000439232 272 ntBASIC4.67□□□□□ -1.66
COL4A1P02462 AC017067.1-201ENST00000448570 447 ntTSL 5 BASIC4.67□□□□□ -1.66
COL4A1P02462 SUN3-208ENST00000453192 801 ntTSL 5 BASIC4.67□□□□□ -1.66
COL4A1P02462 AC005304.1-201ENST00000457609 405 ntTSL 3 BASIC4.67□□□□□ -1.66
COL4A1P02462 IGKV2-38-201ENST00000517443 247 ntBASIC4.67□□□□□ -1.66
COL4A1P02462 OR5M7P-201ENST00000526140 972 ntBASIC4.67□□□□□ -1.66
COL4A1P02462 AC025265.2-201ENST00000551905 478 ntTSL 3 BASIC4.67□□□□□ -1.66
COL4A1P02462 AC009292.2-201ENST00000558889 291 ntTSL 5 BASIC4.67□□□□□ -1.66
COL4A1P02462 AC010528.1-201ENST00000568714 739 ntTSL 4 BASIC4.67□□□□□ -1.66
COL4A1P02462 SNORA62.6-201ENST00000606322 83 ntBASIC4.67□□□□□ -1.66
COL4A1P02462 POSTN-203ENST00000379747 3373 ntAPPRIS P3 TSL 1 (best) BASIC4.67□□□□□ -1.66
COL4A1P02462 CTXN2-201ENST00000417307 2828 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
COL4A1P02462 AP001284.1-201ENST00000528393 2118 ntBASIC4.67□□□□□ -1.66
COL4A1P02462 ARHGAP28-205ENST00000531294 2171 ntAPPRIS ALT2 TSL 5 BASIC4.67□□□□□ -1.66
COL4A1P02462 GTPBP10-201ENST00000222511 7531 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
COL4A1P02462 ZNF283-201ENST00000324461 2297 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
COL4A1P02462 ARHGAP42-203ENST00000524892 5685 ntTSL 5 BASIC4.67□□□□□ -1.66
COL4A1P02462 KCNJ16-211ENST00000615244 4190 ntAPPRIS P1 TSL 4 BASIC4.67□□□□□ -1.66
COL4A1P02462 AC006148.1-201ENST00000484322 4310 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
COL4A1P02462 SRRM1-203ENST00000447431 3691 ntAPPRIS ALT2 TSL 5 BASIC4.67□□□□□ -1.66
COL4A1P02462 NCOA1-206ENST00000407230 4745 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
COL4A1P02462 LTN1-202ENST00000389194 7749 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
COL4A1P02462 SLC15A5-201ENST00000344941 2923 ntAPPRIS P1 TSL 5 BASIC4.67□□□□□ -1.66
COL4A1P02462 RAD17-208ENST00000380774 2117 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
COL4A1P02462 RNVU1-14-201ENST00000384770 164 ntBASIC4.67□□□□□ -1.66
COL4A1P02462 HDGFP1-201ENST00000405943 252 ntBASIC4.67□□□□□ -1.66
COL4A1P02462 AC062032.1-201ENST00000436245 355 ntTSL 5 BASIC4.67□□□□□ -1.66
COL4A1P02462 AL451129.1-201ENST00000437471 285 ntTSL 3 BASIC4.67□□□□□ -1.66
COL4A1P02462 AL645931.1-201ENST00000439737 410 ntBASIC4.67□□□□□ -1.66
COL4A1P02462 RPS3AP12-201ENST00000443616 753 ntBASIC4.67□□□□□ -1.66
COL4A1P02462 RPL23AP12-201ENST00000467573 473 ntBASIC4.67□□□□□ -1.66
COL4A1P02462 DNAJC12-205ENST00000483798 769 ntTSL 3 BASIC4.67□□□□□ -1.66
COL4A1P02462 AC074250.1-201ENST00000511117 192 ntBASIC4.67□□□□□ -1.66
COL4A1P02462 AC007298.1-201ENST00000547346 656 ntTSL 3 BASIC4.67□□□□□ -1.66
COL4A1P02462 AC027288.1-203ENST00000552167 567 ntTSL 4 BASIC4.67□□□□□ -1.66
COL4A1P02462 AC243829.5-201ENST00000578447 247 ntTSL 5 BASIC4.67□□□□□ -1.66
COL4A1P02462 LINC00649-214ENST00000609132 668 ntTSL 5 BASIC4.67□□□□□ -1.66
COL4A1P02462 MIR7975-201ENST00000619350 68 ntBASIC4.67□□□□□ -1.66
COL4A1P02462 RFX7-201ENST00000559447 10426 ntAPPRIS P5 TSL 5 BASIC4.67□□□□□ -1.66
COL4A1P02462 CDON-206ENST00000531738 5803 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
COL4A1P02462 FAT4-202ENST00000394329 16123 ntAPPRIS P1 TSL 5 BASIC4.67□□□□□ -1.66
COL4A1P02462 BCLAF1-207ENST00000527759 4373 ntAPPRIS ALT2 TSL 1 (best) BASIC4.66□□□□□ -1.66
COL4A1P02462 LINC00561-201ENST00000565815 2738 ntBASIC4.66□□□□□ -1.66
COL4A1P02462 DOCK10-202ENST00000409592 7288 ntAPPRIS ALT2 TSL 1 (best) BASIC4.66□□□□□ -1.66
COL4A1P02462 PRG4-203ENST00000367485 4765 ntAPPRIS ALT2 TSL 5 BASIC4.66□□□□□ -1.66
COL4A1P02462 HYDIN-201ENST00000288168 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC4.66□□□□□ -1.66
COL4A1P02462 TJP1-202ENST00000356107 6747 ntAPPRIS ALT2 TSL 5 BASIC4.66□□□□□ -1.66
COL4A1P02462 SNORD9-201ENST00000362566 104 ntBASIC4.66□□□□□ -1.66
COL4A1P02462 SNORA3.3-201ENST00000408712 125 ntBASIC4.66□□□□□ -1.66
COL4A1P02462 TTTY12-201ENST00000413466 979 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
COL4A1P02462 ZNF736P2Y-201ENST00000416040 1279 ntBASIC4.66□□□□□ -1.66
COL4A1P02462 AL035423.1-201ENST00000420331 213 ntBASIC4.66□□□□□ -1.66
COL4A1P02462 RPS3AP46-201ENST00000448352 682 ntBASIC4.66□□□□□ -1.66
COL4A1P02462 DLG1-216ENST00000450955 2682 ntAPPRIS ALT1 TSL 5 BASIC4.66□□□□□ -1.66
COL4A1P02462 LINC00393-202ENST00000452852 485 ntTSL 3 BASIC4.66□□□□□ -1.66
COL4A1P02462 AL353633.1-201ENST00000458480 382 ntTSL 3 BASIC4.66□□□□□ -1.66
COL4A1P02462 AC006511.1-201ENST00000470614 315 ntBASIC4.66□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 76.5 ms