Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 OPALIN-206ENST00000611913 3115 ntTSL 5 BASIC7.41□□□□□ -1.22
COL9A1P20849 SPHKAP-202ENST00000392056 6917 ntAPPRIS ALT2 TSL 1 (best) BASIC7.41□□□□□ -1.22
COL9A1P20849 FHL1-216ENST00000535737 2325 ntTSL 3 BASIC7.41□□□□□ -1.22
COL9A1P20849 TRPS1-208ENST00000519076 3329 ntTSL 5 BASIC7.41□□□□□ -1.22
COL9A1P20849 DHX40P1-201ENST00000588725 1412 ntBASIC7.41□□□□□ -1.22
COL9A1P20849 LINC02447-201ENST00000499242 1500 ntTSL 1 (best) BASIC7.41□□□□□ -1.22
COL9A1P20849 GDNF-202ENST00000344622 3655 ntTSL 1 (best) BASIC7.41□□□□□ -1.22
COL9A1P20849 AL591379.1-201ENST00000315293 3739 ntTSL 2 BASIC7.41□□□□□ -1.22
COL9A1P20849 ESRP1-202ENST00000423620 3746 ntAPPRIS ALT1 TSL 1 (best) BASIC7.41□□□□□ -1.22
COL9A1P20849 RECQL-204ENST00000444129 3702 ntAPPRIS P1 TSL 2 BASIC7.41□□□□□ -1.22
COL9A1P20849 GPR1-AS-201ENST00000623040 3708 ntTSL 1 (best) BASIC7.41□□□□□ -1.22
COL9A1P20849 STK33-201ENST00000315204 2707 ntAPPRIS P1 TSL 1 (best) BASIC7.41□□□□□ -1.22
COL9A1P20849 FANCL-201ENST00000233741 1683 ntAPPRIS P3 TSL 1 (best) BASIC7.41□□□□□ -1.22
COL9A1P20849 BVES-AS1-202ENST00000369122 1716 ntTSL 1 (best) BASIC7.41□□□□□ -1.22
COL9A1P20849 MAGEB16-205ENST00000399992 1734 ntAPPRIS ALT2 TSL 5 BASIC7.41□□□□□ -1.22
COL9A1P20849 SCYL3-202ENST00000367771 6364 ntTSL 1 (best) BASIC7.41□□□□□ -1.22
COL9A1P20849 ANKRD36BP1-201ENST00000358576 1779 ntBASIC7.41□□□□□ -1.22
COL9A1P20849 PKD1L1-201ENST00000289672 9092 ntAPPRIS P1 TSL 1 (best) BASIC7.41□□□□□ -1.22
COL9A1P20849 RIPOR2-208ENST00000613507 5539 ntAPPRIS P4 TSL 5 BASIC7.41□□□□□ -1.22
COL9A1P20849 CAPS2-206ENST00000409799 1859 ntTSL 1 (best) BASIC7.41□□□□□ -1.22
COL9A1P20849 PAIP2B-201ENST00000244221 6279 ntAPPRIS P1 TSL 1 (best) BASIC7.4□□□□□ -1.22
COL9A1P20849 RASGEF1B-203ENST00000436139 6323 ntTSL 1 (best) BASIC7.4□□□□□ -1.22
COL9A1P20849 MAP4K4-201ENST00000302217 6624 ntTSL 1 (best) BASIC7.4□□□□□ -1.22
COL9A1P20849 RC3H1-203ENST00000367696 11261 ntAPPRIS P3 TSL 5 BASIC7.4□□□□□ -1.22
COL9A1P20849 MIPOL1-204ENST00000539062 2389 ntTSL 1 (best) BASIC7.4□□□□□ -1.22
COL9A1P20849 ENTPD5-201ENST00000334696 5842 ntAPPRIS P1 TSL 5 BASIC7.4□□□□□ -1.22
COL9A1P20849 VPS36-201ENST00000378060 4417 ntAPPRIS P1 TSL 1 (best) BASIC7.4□□□□□ -1.22
COL9A1P20849 NUP155-201ENST00000231498 8143 ntAPPRIS P1 TSL 1 (best) BASIC7.4□□□□□ -1.22
COL9A1P20849 ARHGEF7-208ENST00000426073 4921 ntAPPRIS P3 TSL 1 (best) BASIC7.4□□□□□ -1.22
COL9A1P20849 ERG-205ENST00000398910 4954 ntTSL 5 BASIC7.4□□□□□ -1.22
COL9A1P20849 NSD2-208ENST00000420906 5109 ntTSL 1 (best) BASIC7.4□□□□□ -1.22
COL9A1P20849 NIPBL-201ENST00000282516 10435 ntAPPRIS P1 TSL 1 (best) BASIC7.4□□□□□ -1.22
COL9A1P20849 OR2M2-201ENST00000359682 1044 ntAPPRIS P1 BASIC7.4□□□□□ -1.22
COL9A1P20849 THEM5-201ENST00000368817 984 ntAPPRIS P1 TSL 1 (best) BASIC7.4□□□□□ -1.22
COL9A1P20849 TRBV23-1-201ENST00000390396 347 ntAPPRIS P1 BASIC7.4□□□□□ -1.22
COL9A1P20849 SAR1AP2-201ENST00000392696 594 ntBASIC7.4□□□□□ -1.22
COL9A1P20849 AL590143.1-201ENST00000405071 138 ntBASIC7.4□□□□□ -1.22
COL9A1P20849 SERHL2-204ENST00000407614 521 ntTSL 1 (best) BASIC7.4□□□□□ -1.22
COL9A1P20849 AC008060.2-201ENST00000415333 468 ntTSL 3 BASIC7.4□□□□□ -1.22
COL9A1P20849 LINC01820-201ENST00000418415 570 ntTSL 2 BASIC7.4□□□□□ -1.22
COL9A1P20849 AL034379.1-201ENST00000423216 253 ntBASIC7.4□□□□□ -1.22
COL9A1P20849 RBMY1KP-201ENST00000423480 476 ntBASIC7.4□□□□□ -1.22
COL9A1P20849 TAB3-AS1-201ENST00000428263 245 ntTSL 5 BASIC7.4□□□□□ -1.22
COL9A1P20849 AL954705.1-201ENST00000435277 559 ntBASIC7.4□□□□□ -1.22
COL9A1P20849 AP000770.1-201ENST00000444123 583 ntTSL 5 BASIC7.4□□□□□ -1.22
COL9A1P20849 RN7SL254P-201ENST00000460609 284 ntBASIC7.4□□□□□ -1.22
COL9A1P20849 RN7SL492P-201ENST00000460700 295 ntBASIC7.4□□□□□ -1.22
COL9A1P20849 EIF3KP3-201ENST00000514461 639 ntBASIC7.4□□□□□ -1.22
COL9A1P20849 AC005699.1-203ENST00000515286 688 ntTSL 3 BASIC7.4□□□□□ -1.22
COL9A1P20849 IGKV2D-23-201ENST00000518179 286 ntBASIC7.4□□□□□ -1.22
COL9A1P20849 AC103808.4-201ENST00000577258 391 ntTSL 3 BASIC7.4□□□□□ -1.22
COL9A1P20849 AC022884.3-201ENST00000579571 248 ntBASIC7.4□□□□□ -1.22
COL9A1P20849 DAB1-AS1-208ENST00000586465 748 ntTSL 5 BASIC7.4□□□□□ -1.22
COL9A1P20849 AC243919.1-201ENST00000613086 785 ntTSL 5 BASIC7.4□□□□□ -1.22
COL9A1P20849 AL445363.3-201ENST00000623080 671 ntBASIC7.4□□□□□ -1.22
COL9A1P20849 AC011155.2-201ENST00000623202 216 ntBASIC7.4□□□□□ -1.22
COL9A1P20849 AC127459.3-201ENST00000624328 466 ntBASIC7.4□□□□□ -1.22
COL9A1P20849 CCT5-215ENST00000625723 135 ntTSL 5 BASIC7.4□□□□□ -1.22
COL9A1P20849 AC027559.1-201ENST00000636288 271 ntBASIC7.4□□□□□ -1.22
COL9A1P20849 AL353572.3-201ENST00000636536 670 ntAPPRIS P1 BASIC7.4□□□□□ -1.22
COL9A1P20849 PPFIA2-202ENST00000407050 3903 ntTSL 2 BASIC7.4□□□□□ -1.22
COL9A1P20849 BBS9-203ENST00000355070 4004 ntAPPRIS P3 TSL 5 BASIC7.4□□□□□ -1.22
COL9A1P20849 POT1-201ENST00000357628 4080 ntAPPRIS P1 TSL 2 BASIC7.4□□□□□ -1.22
COL9A1P20849 LINC00862-201ENST00000367355 1417 ntTSL 1 (best) BASIC7.4□□□□□ -1.22
COL9A1P20849 FAM71D-211ENST00000612183 1790 ntAPPRIS P1 TSL 2 BASIC7.4□□□□□ -1.23
COL9A1P20849 PXT1-201ENST00000454782 2108 ntAPPRIS P2 TSL 1 (best) BASIC7.4□□□□□ -1.23
COL9A1P20849 ZNF566-201ENST00000392170 2755 ntAPPRIS ALT2 TSL 5 BASIC7.4□□□□□ -1.23
COL9A1P20849 HKR1-223ENST00000591471 3472 ntTSL 2 BASIC7.4□□□□□ -1.23
COL9A1P20849 TTI1-201ENST00000373447 3825 ntAPPRIS P1 TSL 1 (best) BASIC7.4□□□□□ -1.23
COL9A1P20849 SLC13A3-202ENST00000290317 3994 ntTSL 5 BASIC7.4□□□□□ -1.23
COL9A1P20849 NBR1-201ENST00000341165 4656 ntAPPRIS P3 TSL 1 (best) BASIC7.4□□□□□ -1.23
COL9A1P20849 MYO1B-201ENST00000304164 4933 ntAPPRIS P1 TSL 1 (best) BASIC7.4□□□□□ -1.23
COL9A1P20849 VANGL1-204ENST00000369510 8647 ntAPPRIS ALT1 TSL 1 (best) BASIC7.39□□□□□ -1.23
COL9A1P20849 ZNF107-204ENST00000423627 5773 ntTSL 5 BASIC7.39□□□□□ -1.23
COL9A1P20849 C18orf32-203ENST00000613385 5395 ntAPPRIS P1 TSL 2 BASIC7.39□□□□□ -1.23
COL9A1P20849 ARHGAP12-204ENST00000375250 4914 ntTSL 1 (best) BASIC7.39□□□□□ -1.23
COL9A1P20849 LMO7-205ENST00000377534 4896 ntAPPRIS ALT2 TSL 1 (best) BASIC7.39□□□□□ -1.23
COL9A1P20849 KIF15-201ENST00000326047 4842 ntAPPRIS P1 TSL 1 (best) BASIC7.39□□□□□ -1.23
COL9A1P20849 RASGRP3-202ENST00000403687 4807 ntAPPRIS P3 TSL 1 (best) BASIC7.39□□□□□ -1.23
COL9A1P20849 OR2F1-203ENST00000641412 4829 ntAPPRIS P1 BASIC7.39□□□□□ -1.23
COL9A1P20849 ABRAXAS2-201ENST00000298492 2992 ntAPPRIS P1 TSL 1 (best) BASIC7.39□□□□□ -1.23
COL9A1P20849 UBA2-202ENST00000439527 2802 ntTSL 2 BASIC7.39□□□□□ -1.23
COL9A1P20849 ZNF585B-203ENST00000527838 2732 ntTSL 1 (best) BASIC7.39□□□□□ -1.23
COL9A1P20849 FANCD2-205ENST00000431693 2450 ntTSL 1 (best) BASIC7.39□□□□□ -1.23
COL9A1P20849 TAF7L-203ENST00000372907 2341 ntAPPRIS P3 TSL 1 (best) BASIC7.39□□□□□ -1.23
COL9A1P20849 KCNJ16-205ENST00000586462 1897 ntTSL 5 BASIC7.39□□□□□ -1.23
COL9A1P20849 AFG1L-201ENST00000368977 5208 ntAPPRIS P1 TSL 1 (best) BASIC7.39□□□□□ -1.23
COL9A1P20849 ZNF192P1-201ENST00000440790 1628 ntTSL 5 BASIC7.39□□□□□ -1.23
COL9A1P20849 GLYATL1P1-201ENST00000528297 1607 ntBASIC7.39□□□□□ -1.23
COL9A1P20849 AC019117.1-201ENST00000636929 1462 ntTSL 5 BASIC7.39□□□□□ -1.23
COL9A1P20849 TMCC3-203ENST00000551457 4361 ntTSL 1 (best) BASIC7.39□□□□□ -1.23
COL9A1P20849 RN7SKP162-201ENST00000363605 345 ntBASIC7.39□□□□□ -1.23
COL9A1P20849 MIR575-201ENST00000385013 94 ntBASIC7.39□□□□□ -1.23
COL9A1P20849 MIR105-2-201ENST00000385083 81 ntBASIC7.39□□□□□ -1.23
COL9A1P20849 SNORA3.1-201ENST00000408166 111 ntBASIC7.39□□□□□ -1.23
COL9A1P20849 RN7SKP222-201ENST00000410651 315 ntBASIC7.39□□□□□ -1.23
COL9A1P20849 AL133384.1-201ENST00000412744 351 ntBASIC7.39□□□□□ -1.23
COL9A1P20849 OR2AT2P-201ENST00000413438 905 ntBASIC7.39□□□□□ -1.23
COL9A1P20849 AL451074.5-201ENST00000415894 435 ntBASIC7.39□□□□□ -1.23
COL9A1P20849 RPL36AP36-201ENST00000418616 301 ntBASIC7.39□□□□□ -1.23
Retrieved 100 of 98,524 protein–RNA pairs in 100.1 ms