Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 MIR8084-201ENST00000614105 89 ntBASIC5.23□□□□□ -1.57
BDNFP23560 AC019206.1-201ENST00000621938 425 ntBASIC5.23□□□□□ -1.57
BDNFP23560 AC020923.1-201ENST00000624021 917 ntBASIC5.23□□□□□ -1.57
BDNFP23560 AL109659.3-201ENST00000624985 950 ntBASIC5.23□□□□□ -1.57
BDNFP23560 ZRANB3-201ENST00000264159 4046 ntAPPRIS P3 TSL 1 (best) BASIC5.23□□□□□ -1.57
BDNFP23560 SAMMSON-226ENST00000642089 1582 ntBASIC5.23□□□□□ -1.57
BDNFP23560 DNAAF4-CCPG1-201ENST00000565113 4589 ntTSL 2 BASIC5.23□□□□□ -1.57
BDNFP23560 PROM1-220ENST00000540805 3908 ntAPPRIS ALT2 TSL 5 BASIC5.23□□□□□ -1.57
BDNFP23560 ZNF678-201ENST00000343776 8556 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
BDNFP23560 GTDC1-202ENST00000344850 2607 ntAPPRIS P1 TSL 5 BASIC5.23□□□□□ -1.57
BDNFP23560 ABCA6-206ENST00000590645 1511 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
BDNFP23560 PSMD6-202ENST00000394431 1349 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
BDNFP23560 PRUNE2-207ENST00000428286 12437 ntTSL 5 BASIC5.22□□□□□ -1.57
BDNFP23560 THAP12P5-201ENST00000405864 2275 ntBASIC5.22□□□□□ -1.57
BDNFP23560 MBNL1-203ENST00000324196 5225 ntTSL 5 BASIC5.22□□□□□ -1.57
BDNFP23560 USP8-204ENST00000425032 3559 ntTSL 2 BASIC5.22□□□□□ -1.57
BDNFP23560 C3orf58-202ENST00000441925 3260 ntTSL 2 BASIC5.22□□□□□ -1.57
BDNFP23560 AL583808.2-201ENST00000418078 1382 ntTSL 5 BASIC5.22□□□□□ -1.57
BDNFP23560 GPR174-201ENST00000276077 1258 ntAPPRIS P1 BASIC5.22□□□□□ -1.57
BDNFP23560 HOMER1-201ENST00000282260 774 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
BDNFP23560 GUCA1C-202ENST00000393963 900 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
BDNFP23560 DEFB115-201ENST00000400552 267 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
BDNFP23560 RPL21P67-201ENST00000402896 478 ntBASIC5.22□□□□□ -1.57
BDNFP23560 RN7SKP16-201ENST00000410180 299 ntBASIC5.22□□□□□ -1.57
BDNFP23560 RNU6-272P-201ENST00000411028 104 ntBASIC5.22□□□□□ -1.57
BDNFP23560 AC005165.1-203ENST00000423689 1281 ntTSL 3 BASIC5.22□□□□□ -1.57
BDNFP23560 AL451042.1-201ENST00000426353 544 ntTSL 3 BASIC5.22□□□□□ -1.57
BDNFP23560 LINC01704-202ENST00000442358 649 ntTSL 3 BASIC5.22□□□□□ -1.57
BDNFP23560 PCBP1-AS1-237ENST00000452431 1194 ntTSL 4 BASIC5.22□□□□□ -1.57
BDNFP23560 AGBL4-IT1-201ENST00000457061 514 ntTSL 3 BASIC5.22□□□□□ -1.57
BDNFP23560 RPL23AP56-201ENST00000460778 453 ntBASIC5.22□□□□□ -1.57
BDNFP23560 CYCSP20-201ENST00000473154 315 ntBASIC5.22□□□□□ -1.57
BDNFP23560 MTCO2P9-201ENST00000503214 694 ntBASIC5.22□□□□□ -1.57
BDNFP23560 RNU6-488P-201ENST00000515918 99 ntBASIC5.22□□□□□ -1.57
BDNFP23560 AC100871.2-201ENST00000522005 327 ntTSL 3 BASIC5.22□□□□□ -1.57
BDNFP23560 AC025437.5-201ENST00000522769 314 ntTSL 3 BASIC5.22□□□□□ -1.57
BDNFP23560 LONRF1-203ENST00000525024 841 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
BDNFP23560 AC009652.2-201ENST00000527978 516 ntTSL 5 BASIC5.22□□□□□ -1.57
BDNFP23560 AP000916.1-201ENST00000533869 835 ntBASIC5.22□□□□□ -1.57
BDNFP23560 AC006206.2-202ENST00000537714 648 ntTSL 5 BASIC5.22□□□□□ -1.57
BDNFP23560 AGGF1P9-201ENST00000561884 913 ntBASIC5.22□□□□□ -1.57
BDNFP23560 CEACAM7-204ENST00000602225 524 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
BDNFP23560 AL353726.1-201ENST00000614041 1000 ntBASIC5.22□□□□□ -1.57
BDNFP23560 AL049794.2-201ENST00000616301 365 ntBASIC5.22□□□□□ -1.57
BDNFP23560 AL669942.2-201ENST00000620352 697 ntBASIC5.22□□□□□ -1.57
BDNFP23560 AL138828.1-201ENST00000626414 291 ntTSL 5 BASIC5.22□□□□□ -1.57
BDNFP23560 ASAH1-263ENST00000637872 886 ntTSL 5 BASIC5.22□□□□□ -1.57
BDNFP23560 ZNF836-204ENST00000597252 3209 ntAPPRIS P2 TSL 2 BASIC5.22□□□□□ -1.57
BDNFP23560 WDR35-202ENST00000345530 6960 ntAPPRIS ALT1 TSL 1 (best) BASIC5.22□□□□□ -1.57
BDNFP23560 ATPAF1-212ENST00000542495 1779 ntTSL 2 BASIC5.21□□□□□ -1.57
BDNFP23560 NAP1L1-204ENST00000535020 1686 ntTSL 2 BASIC5.21□□□□□ -1.57
BDNFP23560 CREM-206ENST00000354759 1589 ntTSL 1 (best) BASIC5.21□□□□□ -1.57
BDNFP23560 VIP-201ENST00000367243 1581 ntAPPRIS ALT1 TSL 1 (best) BASIC5.21□□□□□ -1.57
BDNFP23560 UBR5-204ENST00000518205 1931 ntTSL 5 BASIC5.21□□□□□ -1.57
BDNFP23560 NMD3P1-201ENST00000439704 1488 ntBASIC5.21□□□□□ -1.58
BDNFP23560 FCHO2-207ENST00000512348 2700 ntTSL 2 BASIC5.21□□□□□ -1.58
BDNFP23560 SPART-202ENST00000438666 4789 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.58
BDNFP23560 ATP6V1G3-202ENST00000309309 678 ntTSL 5 BASIC5.21□□□□□ -1.58
BDNFP23560 RNA5SP191-201ENST00000362585 102 ntBASIC5.21□□□□□ -1.58
BDNFP23560 RRM2B-203ENST00000395912 900 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
BDNFP23560 AL365184.1-201ENST00000413801 572 ntTSL 3 BASIC5.21□□□□□ -1.58
BDNFP23560 PSMA2P3-201ENST00000429685 675 ntBASIC5.21□□□□□ -1.58
BDNFP23560 AC016292.1-201ENST00000438344 235 ntTSL 3 BASIC5.21□□□□□ -1.58
BDNFP23560 Z93403.1-202ENST00000440002 713 ntTSL 3 BASIC5.21□□□□□ -1.58
BDNFP23560 AC004865.1-201ENST00000442276 1003 ntBASIC5.21□□□□□ -1.58
BDNFP23560 AL160271.1-201ENST00000444708 829 ntTSL 3 BASIC5.21□□□□□ -1.58
BDNFP23560 AP003774.4-201ENST00000447028 672 ntTSL 2 BASIC5.21□□□□□ -1.58
BDNFP23560 RPL29P29-201ENST00000448725 423 ntBASIC5.21□□□□□ -1.58
BDNFP23560 TMEM246-AS1-204ENST00000450109 538 ntTSL 3 BASIC5.21□□□□□ -1.58
BDNFP23560 RPL23AP15-201ENST00000450202 459 ntBASIC5.21□□□□□ -1.58
BDNFP23560 TPT1P1-201ENST00000458495 518 ntBASIC5.21□□□□□ -1.58
BDNFP23560 RPS17P2-201ENST00000461663 408 ntBASIC5.21□□□□□ -1.58
BDNFP23560 AL049874.2-201ENST00000492636 288 ntBASIC5.21□□□□□ -1.58
BDNFP23560 AC104071.1-201ENST00000505636 602 ntTSL 3 BASIC5.21□□□□□ -1.58
BDNFP23560 LINC02224-201ENST00000505706 584 ntTSL 4 BASIC5.21□□□□□ -1.58
BDNFP23560 AC104119.1-201ENST00000508829 339 ntTSL 5 BASIC5.21□□□□□ -1.58
BDNFP23560 RNA5SP392-201ENST00000516905 112 ntBASIC5.21□□□□□ -1.58
BDNFP23560 AC124293.1-201ENST00000530034 493 ntBASIC5.21□□□□□ -1.58
BDNFP23560 AP002765.2-201ENST00000532961 666 ntTSL 3 BASIC5.21□□□□□ -1.58
BDNFP23560 LINC02306-201ENST00000546412 529 ntTSL 3 BASIC5.21□□□□□ -1.58
BDNFP23560 LINC02156-201ENST00000552320 483 ntTSL 2 BASIC5.21□□□□□ -1.58
BDNFP23560 AC040958.1-201ENST00000561102 201 ntBASIC5.21□□□□□ -1.58
BDNFP23560 LINC01584-202ENST00000563990 852 ntTSL 3 BASIC5.21□□□□□ -1.58
BDNFP23560 MIR4700-201ENST00000578311 74 ntBASIC5.21□□□□□ -1.58
BDNFP23560 MIR7515HG-226ENST00000588330 1055 ntTSL 5 BASIC5.21□□□□□ -1.58
BDNFP23560 CCL4-203ENST00000621626 552 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
BDNFP23560 SALL4P2-201ENST00000423288 2910 ntBASIC5.21□□□□□ -1.58
BDNFP23560 SCN3A-203ENST00000409101 6599 ntAPPRIS ALT1 TSL 1 (best) BASIC5.21□□□□□ -1.58
BDNFP23560 ZRANB2-201ENST00000254821 2821 ntAPPRIS ALT2 TSL 1 (best) BASIC5.21□□□□□ -1.58
BDNFP23560 ELAVL2-202ENST00000380110 3691 ntTSL 5 BASIC5.21□□□□□ -1.58
BDNFP23560 MED23-203ENST00000368058 4576 ntTSL 5 BASIC5.21□□□□□ -1.58
BDNFP23560 ITCH-207ENST00000535650 2940 ntTSL 2 BASIC5.2□□□□□ -1.58
BDNFP23560 SSR1-202ENST00000397511 3248 ntTSL 5 BASIC5.2□□□□□ -1.58
BDNFP23560 AL133243.3-201ENST00000617415 3004 ntBASIC5.2□□□□□ -1.58
BDNFP23560 NTS-201ENST00000256010 1237 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
BDNFP23560 MDM2-203ENST00000299252 966 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
BDNFP23560 TRBV24-1-201ENST00000390397 381 ntAPPRIS P1 BASIC5.2□□□□□ -1.58
BDNFP23560 AL357515.1-201ENST00000402967 542 ntBASIC5.2□□□□□ -1.58
BDNFP23560 LIPN-201ENST00000404459 1197 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
BDNFP23560 PTGES3P2-201ENST00000407942 482 ntBASIC5.2□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 86.6 ms