Protein–RNA interactions for Protein: P31269

HOXA9, Homeobox protein Hox-A9, humanhuman

Predictions only

Length 272 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA9P31269 MIR6867-201ENST00000610636 67 ntBASIC4.53□□□□□ -1.68
HOXA9P31269 DNAJC10-209ENST00000613960 1010 ntTSL 5 BASIC4.53□□□□□ -1.68
HOXA9P31269 AC005086.4-201ENST00000623065 213 ntBASIC4.53□□□□□ -1.68
HOXA9P31269 AP003072.5-201ENST00000623872 773 ntBASIC4.53□□□□□ -1.68
HOXA9P31269 USP44-201ENST00000258499 4022 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
HOXA9P31269 ANKRD30A-201ENST00000361713 4405 ntAPPRIS P2 TSL 5 BASIC4.53□□□□□ -1.68
HOXA9P31269 MPHOSPH9-211ENST00000541076 6136 ntAPPRIS ALT2 TSL 5 BASIC4.53□□□□□ -1.68
HOXA9P31269 CLHC1-203ENST00000406076 1777 ntTSL 1 (best) BASIC4.53□□□□□ -1.69
HOXA9P31269 MBNL3-201ENST00000370839 1575 ntAPPRIS ALT1 TSL 1 (best) BASIC4.53□□□□□ -1.69
HOXA9P31269 LRRC3B-205ENST00000456208 1551 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.69
HOXA9P31269 PUS7L-201ENST00000344862 13593 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
HOXA9P31269 ZNF560-201ENST00000301480 2654 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
HOXA9P31269 DEPDC1-202ENST00000456315 5331 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
HOXA9P31269 CUL4AP1-201ENST00000514750 1863 ntBASIC4.52□□□□□ -1.69
HOXA9P31269 STON1-GTF2A1L-201ENST00000394751 3534 ntTSL 2 BASIC4.52□□□□□ -1.69
HOXA9P31269 R3HCC1L-205ENST00000612478 3337 ntTSL 5 BASIC4.52□□□□□ -1.69
HOXA9P31269 CCSER2-210ENST00000543283 5888 ntTSL 2 BASIC4.52□□□□□ -1.69
HOXA9P31269 DEFB4B-201ENST00000318157 332 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
HOXA9P31269 DEFB128-201ENST00000334391 373 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
HOXA9P31269 OR8G1-201ENST00000341493 936 ntAPPRIS P1 BASIC4.52□□□□□ -1.69
HOXA9P31269 RNA5SP513-201ENST00000364648 118 ntBASIC4.52□□□□□ -1.69
HOXA9P31269 S100G-201ENST00000380200 455 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
HOXA9P31269 ENSAP1-201ENST00000392855 326 ntBASIC4.52□□□□□ -1.69
HOXA9P31269 RN7SKP182-201ENST00000410772 298 ntBASIC4.52□□□□□ -1.69
HOXA9P31269 RPS20P14-201ENST00000412545 360 ntBASIC4.52□□□□□ -1.69
HOXA9P31269 OR8G2P-201ENST00000412796 908 ntBASIC4.52□□□□□ -1.69
HOXA9P31269 AL031674.1-202ENST00000413070 465 ntTSL 3 BASIC4.52□□□□□ -1.69
HOXA9P31269 AC009237.10-201ENST00000414112 510 ntBASIC4.52□□□□□ -1.69
HOXA9P31269 RAB9AP4-201ENST00000415230 609 ntBASIC4.52□□□□□ -1.69
HOXA9P31269 AC108032.1-201ENST00000416706 207 ntBASIC4.52□□□□□ -1.69
HOXA9P31269 LINC02542-201ENST00000418567 822 ntTSL 5 BASIC4.52□□□□□ -1.69
HOXA9P31269 AC099060.1-201ENST00000427806 448 ntTSL 3 BASIC4.52□□□□□ -1.69
HOXA9P31269 AL117339.2-201ENST00000430475 180 ntBASIC4.52□□□□□ -1.69
HOXA9P31269 COX6B1P7-201ENST00000430845 235 ntBASIC4.52□□□□□ -1.69
HOXA9P31269 GPC6-AS1-201ENST00000436329 698 ntTSL 5 BASIC4.52□□□□□ -1.69
HOXA9P31269 LINC01773-201ENST00000437598 787 ntTSL 2 BASIC4.52□□□□□ -1.69
HOXA9P31269 RPL21P89-201ENST00000444021 467 ntBASIC4.52□□□□□ -1.69
HOXA9P31269 AC243772.1-201ENST00000451620 410 ntBASIC4.52□□□□□ -1.69
HOXA9P31269 AC091153.1-201ENST00000466297 402 ntBASIC4.52□□□□□ -1.69
HOXA9P31269 AC025470.2-201ENST00000506106 897 ntTSL 2 BASIC4.52□□□□□ -1.69
HOXA9P31269 PGBD4P4-201ENST00000509673 613 ntBASIC4.52□□□□□ -1.69
HOXA9P31269 AC108064.1-201ENST00000513791 460 ntBASIC4.52□□□□□ -1.69
HOXA9P31269 RNA5SP519-201ENST00000516480 119 ntBASIC4.52□□□□□ -1.69
HOXA9P31269 AC105233.3-201ENST00000531125 744 ntBASIC4.52□□□□□ -1.69
HOXA9P31269 SNHG1-208ENST00000538266 347 ntTSL 3 BASIC4.52□□□□□ -1.69
HOXA9P31269 PPFIA2-AS1-202ENST00000549161 1080 ntTSL 3 BASIC4.52□□□□□ -1.69
HOXA9P31269 AC128707.1-201ENST00000552230 494 ntTSL 3 BASIC4.52□□□□□ -1.69
HOXA9P31269 LINC00254-201ENST00000563416 662 ntTSL 3 BASIC4.52□□□□□ -1.69
HOXA9P31269 AGGF1P6-201ENST00000569213 976 ntBASIC4.52□□□□□ -1.69
HOXA9P31269 MIR4286-201ENST00000580651 93 ntBASIC4.52□□□□□ -1.69
HOXA9P31269 AC006130.2-201ENST00000586202 326 ntBASIC4.52□□□□□ -1.69
HOXA9P31269 AL354984.3-201ENST00000604803 325 ntBASIC4.52□□□□□ -1.69
HOXA9P31269 RNU4-89P-201ENST00000607443 133 ntBASIC4.52□□□□□ -1.69
HOXA9P31269 AL354950.1-201ENST00000614150 568 ntBASIC4.52□□□□□ -1.69
HOXA9P31269 AL445363.3-201ENST00000623080 671 ntBASIC4.52□□□□□ -1.69
HOXA9P31269 FP325313.1-201ENST00000638228 703 ntBASIC4.52□□□□□ -1.69
HOXA9P31269 GABRA2-202ENST00000381620 2525 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
HOXA9P31269 DCDC1-211ENST00000597505 5352 ntAPPRIS ALT2 TSL 5 BASIC4.52□□□□□ -1.69
HOXA9P31269 FAM133A-202ENST00000332647 3159 ntAPPRIS P1 TSL 2 BASIC4.52□□□□□ -1.69
HOXA9P31269 CPXCR1-202ENST00000373111 1577 ntAPPRIS P1 TSL 2 BASIC4.52□□□□□ -1.69
HOXA9P31269 FAM114A2-210ENST00000520313 1394 ntTSL 2 BASIC4.52□□□□□ -1.69
HOXA9P31269 RABGAP1L-202ENST00000325589 1880 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
HOXA9P31269 TMEM71-210ENST00000523829 1974 ntAPPRIS ALT2 TSL 5 BASIC4.51□□□□□ -1.69
HOXA9P31269 PTCD2-202ENST00000380639 11151 ntAPPRIS P1 TSL 5 BASIC4.51□□□□□ -1.69
HOXA9P31269 PCDH11X-204ENST00000373088 4069 ntAPPRIS ALT2 TSL 1 (best) BASIC4.51□□□□□ -1.69
HOXA9P31269 POLR2B-201ENST00000314595 3748 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
HOXA9P31269 SYNE2-203ENST00000357395 21555 ntTSL 5 BASIC4.51□□□□□ -1.69
HOXA9P31269 FAM49B-212ENST00000519110 1902 ntAPPRIS P1 TSL 5 BASIC4.51□□□□□ -1.69
HOXA9P31269 PLCE1-202ENST00000371380 12024 ntAPPRIS P3 TSL 1 (best) BASIC4.51□□□□□ -1.69
HOXA9P31269 OR56A1-202ENST00000641423 6096 ntAPPRIS P1 BASIC4.51□□□□□ -1.69
HOXA9P31269 PLET1-201ENST00000338832 1215 ntAPPRIS P1 TSL 5 BASIC4.51□□□□□ -1.69
HOXA9P31269 MIR372-201ENST00000362225 67 ntBASIC4.51□□□□□ -1.69
HOXA9P31269 AL583835.1-201ENST00000399570 407 ntBASIC4.51□□□□□ -1.69
HOXA9P31269 AC097374.1-203ENST00000400783 485 ntBASIC4.51□□□□□ -1.69
HOXA9P31269 RNA5SP36-201ENST00000410197 133 ntBASIC4.51□□□□□ -1.69
HOXA9P31269 LINC01821-201ENST00000419786 1084 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
HOXA9P31269 AL020993.1-201ENST00000420172 297 ntTSL 3 BASIC4.51□□□□□ -1.69
HOXA9P31269 AC021035.1-201ENST00000421597 427 ntTSL 3 BASIC4.51□□□□□ -1.69
HOXA9P31269 YY1P1-201ENST00000427625 668 ntBASIC4.51□□□□□ -1.69
HOXA9P31269 AC006326.1-201ENST00000445465 787 ntBASIC4.51□□□□□ -1.69
HOXA9P31269 TTTY23B-202ENST00000451467 512 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
HOXA9P31269 TTTY23-201ENST00000452889 512 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
HOXA9P31269 EIF4A2P2-201ENST00000455776 1070 ntBASIC4.51□□□□□ -1.69
HOXA9P31269 AC121764.3-201ENST00000465946 384 ntTSL 2 BASIC4.51□□□□□ -1.69
HOXA9P31269 PLSCR5-202ENST00000482567 1018 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
HOXA9P31269 AC034234.1-201ENST00000502993 465 ntTSL 3 BASIC4.51□□□□□ -1.69
HOXA9P31269 ZCCHC10-206ENST00000509008 608 ntAPPRIS ALT2 TSL 2 BASIC4.51□□□□□ -1.69
HOXA9P31269 ZCCHC10-209ENST00000513541 794 ntAPPRIS ALT2 TSL 2 BASIC4.51□□□□□ -1.69
HOXA9P31269 AC022616.2-201ENST00000523185 300 ntBASIC4.51□□□□□ -1.69
HOXA9P31269 HMGB3P26-201ENST00000560051 582 ntBASIC4.51□□□□□ -1.69
HOXA9P31269 AC068397.1-201ENST00000560337 531 ntTSL 2 BASIC4.51□□□□□ -1.69
HOXA9P31269 TM6SF1-207ENST00000565774 1020 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
HOXA9P31269 AC005692.2-201ENST00000566521 596 ntTSL 3 BASIC4.51□□□□□ -1.69
HOXA9P31269 AC245389.1-201ENST00000605141 529 ntBASIC4.51□□□□□ -1.69
HOXA9P31269 AL353600.1-201ENST00000608148 251 ntBASIC4.51□□□□□ -1.69
HOXA9P31269 VPS29-212ENST00000621131 1124 ntTSL 3 BASIC4.51□□□□□ -1.69
HOXA9P31269 AC010608.2-201ENST00000624830 470 ntBASIC4.51□□□□□ -1.69
HOXA9P31269 CSRNP3-201ENST00000314499 11788 ntAPPRIS P1 TSL 5 BASIC4.51□□□□□ -1.69
HOXA9P31269 MAPK10-320ENST00000641462 6696 ntBASIC4.51□□□□□ -1.69
HOXA9P31269 EYA1-205ENST00000388742 3907 ntAPPRIS P3 TSL 1 (best) BASIC4.51□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 103.3 ms