Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 AL683813.2-201ENST00000605245 502 ntBASIC6.12□□□□□ -1.43
COL8A1P27658 AC104184.1-201ENST00000607513 721 ntBASIC6.12□□□□□ -1.43
COL8A1P27658 5S_rRNA.23-201ENST00000612086 102 ntBASIC6.12□□□□□ -1.43
COL8A1P27658 NBPF9-205ENST00000613595 4527 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
COL8A1P27658 AL355974.1-201ENST00000618896 1708 ntBASIC6.12□□□□□ -1.43
COL8A1P27658 FRMD3-207ENST00000621208 5064 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
COL8A1P27658 AC096582.3-201ENST00000636578 3716 ntAPPRIS P1 TSL 5 BASIC6.12□□□□□ -1.43
COL8A1P27658 LIN7A-204ENST00000552864 6112 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
COL8A1P27658 OR52K1-202ENST00000641528 5456 ntAPPRIS P1 BASIC6.12□□□□□ -1.43
COL8A1P27658 ZNF257-203ENST00000594947 3874 ntAPPRIS P1 TSL 4 BASIC6.12□□□□□ -1.43
COL8A1P27658 PKP4-217ENST00000628904 3856 ntTSL 5 BASIC6.12□□□□□ -1.43
COL8A1P27658 ABL2-201ENST00000344730 6910 ntAPPRIS ALT2 TSL 1 (best) BASIC6.12□□□□□ -1.43
COL8A1P27658 KLHL5-203ENST00000381930 3288 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
COL8A1P27658 TRIM55-202ENST00000315962 2914 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
COL8A1P27658 AC092807.3-203ENST00000467530 2745 ntTSL 2 BASIC6.12□□□□□ -1.43
COL8A1P27658 HSD17B13-201ENST00000302219 2269 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
COL8A1P27658 CUZD1-206ENST00000392790 2279 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
COL8A1P27658 TPK1-207ENST00000538212 2243 ntTSL 2 BASIC6.11□□□□□ -1.43
COL8A1P27658 PDE1C-203ENST00000396184 8852 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
COL8A1P27658 BDNF-209ENST00000420794 4176 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
COL8A1P27658 ZMYND11-204ENST00000381604 4066 ntTSL 5 BASIC6.11□□□□□ -1.43
COL8A1P27658 CRISPLD1-202ENST00000517786 1964 ntTSL 2 BASIC6.11□□□□□ -1.43
COL8A1P27658 CCDC158-202ENST00000434846 1728 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
COL8A1P27658 CREB5-201ENST00000357727 8532 ntAPPRIS P4 TSL 1 (best) BASIC6.11□□□□□ -1.43
COL8A1P27658 CTNND1-236ENST00000533667 4990 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
COL8A1P27658 EPHA6-204ENST00000502694 1582 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
COL8A1P27658 AL354733.2-209ENST00000589233 1434 ntTSL 2 BASIC6.11□□□□□ -1.43
COL8A1P27658 C9orf135-AS1-201ENST00000439418 1375 ntTSL 2 BASIC6.11□□□□□ -1.43
COL8A1P27658 RAB5B-201ENST00000360299 5340 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
COL8A1P27658 MLH3-201ENST00000355774 7896 ntAPPRIS P1 TSL 5 BASIC6.11□□□□□ -1.43
COL8A1P27658 ADA2-201ENST00000262607 3925 ntAPPRIS P3 TSL 1 (best) BASIC6.11□□□□□ -1.43
COL8A1P27658 AL512646.1-201ENST00000269395 1077 ntBASIC6.11□□□□□ -1.43
COL8A1P27658 FAM183A-201ENST00000335282 488 ntAPPRIS P1 TSL 2 BASIC6.11□□□□□ -1.43
COL8A1P27658 RNU6-1097P-201ENST00000363586 107 ntBASIC6.11□□□□□ -1.43
COL8A1P27658 Y_RNA.252-201ENST00000364556 101 ntBASIC6.11□□□□□ -1.43
COL8A1P27658 Y_RNA.350-201ENST00000365409 98 ntBASIC6.11□□□□□ -1.43
COL8A1P27658 CARD17-201ENST00000375707 466 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
COL8A1P27658 AL672167.2-201ENST00000377164 879 ntBASIC6.11□□□□□ -1.43
COL8A1P27658 CBLL1-202ENST00000415884 804 ntTSL 5 BASIC6.11□□□□□ -1.43
COL8A1P27658 RPA2P2-201ENST00000419698 796 ntBASIC6.11□□□□□ -1.43
COL8A1P27658 AC004946.1-201ENST00000421825 751 ntTSL 3 BASIC6.11□□□□□ -1.43
COL8A1P27658 RGS17P1-201ENST00000423358 553 ntBASIC6.11□□□□□ -1.43
COL8A1P27658 PIGPP3-201ENST00000425307 415 ntBASIC6.11□□□□□ -1.43
COL8A1P27658 AC010737.1-201ENST00000426699 559 ntTSL 2 BASIC6.11□□□□□ -1.43
COL8A1P27658 BRWD1P3-201ENST00000428816 390 ntBASIC6.11□□□□□ -1.43
COL8A1P27658 MTND5P15-201ENST00000434246 349 ntBASIC6.11□□□□□ -1.43
COL8A1P27658 AL160004.1-201ENST00000434311 478 ntTSL 3 BASIC6.11□□□□□ -1.43
COL8A1P27658 Z98949.3-201ENST00000436423 472 ntTSL 5 BASIC6.11□□□□□ -1.43
COL8A1P27658 SAMSN1-AS1-201ENST00000449214 840 ntTSL 3 BASIC6.11□□□□□ -1.43
COL8A1P27658 LINC02540-201ENST00000455554 570 ntTSL 3 BASIC6.11□□□□□ -1.43
COL8A1P27658 PCMTD1P1-201ENST00000455560 355 ntBASIC6.11□□□□□ -1.43
COL8A1P27658 AL356010.1-201ENST00000456364 102 ntBASIC6.11□□□□□ -1.43
COL8A1P27658 RPS26P11-201ENST00000463445 348 ntBASIC6.11□□□□□ -1.43
COL8A1P27658 RPS26P6-201ENST00000475156 348 ntBASIC6.11□□□□□ -1.43
COL8A1P27658 RN7SL362P-201ENST00000494228 267 ntBASIC6.11□□□□□ -1.43
COL8A1P27658 MTERF4-220ENST00000495694 909 ntTSL 5 BASIC6.11□□□□□ -1.43
COL8A1P27658 AC026784.1-201ENST00000507986 352 ntBASIC6.11□□□□□ -1.43
COL8A1P27658 AC091849.1-201ENST00000509920 121 ntBASIC6.11□□□□□ -1.43
COL8A1P27658 WDFY3-AS1-201ENST00000510449 493 ntTSL 3 BASIC6.11□□□□□ -1.43
COL8A1P27658 OR52H2P-201ENST00000514607 902 ntBASIC6.11□□□□□ -1.43
COL8A1P27658 RNU6-1308P-201ENST00000516817 103 ntBASIC6.11□□□□□ -1.43
COL8A1P27658 RPL7P20-201ENST00000520308 745 ntBASIC6.11□□□□□ -1.43
COL8A1P27658 AC104316.1-201ENST00000521258 625 ntTSL 3 BASIC6.11□□□□□ -1.43
COL8A1P27658 AC008691.1-202ENST00000521472 811 ntTSL 3 BASIC6.11□□□□□ -1.43
COL8A1P27658 AC111149.1-201ENST00000522560 343 ntTSL 3 BASIC6.11□□□□□ -1.43
COL8A1P27658 AP001636.3-202ENST00000525714 894 ntTSL 3 BASIC6.11□□□□□ -1.43
COL8A1P27658 AP000435.1-201ENST00000528539 496 ntBASIC6.11□□□□□ -1.43
COL8A1P27658 AC023157.2-201ENST00000540596 141 ntBASIC6.11□□□□□ -1.43
COL8A1P27658 IMMP1LP2-201ENST00000552954 492 ntBASIC6.11□□□□□ -1.43
COL8A1P27658 LINC02313-201ENST00000553330 550 ntTSL 2 BASIC6.11□□□□□ -1.43
COL8A1P27658 C14orf119-202ENST00000554203 725 ntAPPRIS P1 TSL 2 BASIC6.11□□□□□ -1.43
COL8A1P27658 AL121579.2-201ENST00000555466 590 ntBASIC6.11□□□□□ -1.43
COL8A1P27658 AC023968.1-201ENST00000560719 475 ntBASIC6.11□□□□□ -1.43
COL8A1P27658 AC040162.2-201ENST00000573092 157 ntBASIC6.11□□□□□ -1.43
COL8A1P27658 AL078601.3-201ENST00000573303 535 ntBASIC6.11□□□□□ -1.43
COL8A1P27658 PPIAL4A-201ENST00000577856 660 ntAPPRIS P1 BASIC6.11□□□□□ -1.43
COL8A1P27658 AC243756.1-201ENST00000584068 660 ntAPPRIS P1 BASIC6.11□□□□□ -1.43
COL8A1P27658 FLG-AS1-207ENST00000628475 497 ntTSL 5 BASIC6.11□□□□□ -1.43
COL8A1P27658 RPS4Y2-201ENST00000629237 792 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
COL8A1P27658 OR2AK2-202ENST00000641852 1008 ntAPPRIS P2 BASIC6.11□□□□□ -1.43
COL8A1P27658 CEP152-201ENST00000325747 4986 ntAPPRIS ALT2 TSL 1 (best) BASIC6.11□□□□□ -1.43
COL8A1P27658 COX7B-203ENST00000481445 2471 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
COL8A1P27658 AC097634.1-201ENST00000604491 2467 ntBASIC6.11□□□□□ -1.43
COL8A1P27658 HYAL4-201ENST00000223026 2407 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
COL8A1P27658 SORT1-209ENST00000538502 6993 ntTSL 2 BASIC6.11□□□□□ -1.43
COL8A1P27658 AL449283.1-201ENST00000602631 3403 ntBASIC6.11□□□□□ -1.43
COL8A1P27658 LINC02085-201ENST00000465215 2051 ntTSL 2 BASIC6.11□□□□□ -1.43
COL8A1P27658 MAPK10-207ENST00000395166 3085 ntAPPRIS P2 TSL 2 BASIC6.11□□□□□ -1.43
COL8A1P27658 OR4K17-203ENST00000641633 5068 ntAPPRIS P1 BASIC6.11□□□□□ -1.43
COL8A1P27658 SLC6A16-202ENST00000454748 2983 ntAPPRIS ALT2 TSL 1 (best) BASIC6.11□□□□□ -1.43
COL8A1P27658 TMEM200A-203ENST00000545622 2918 ntAPPRIS P1 TSL 2 BASIC6.11□□□□□ -1.43
COL8A1P27658 FRMD4B-210ENST00000478263 3761 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
COL8A1P27658 PARP2-201ENST00000250416 1886 ntAPPRIS P3 TSL 1 (best) BASIC6.11□□□□□ -1.43
COL8A1P27658 FBXW7-203ENST00000296555 3572 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
COL8A1P27658 AC083864.3-202ENST00000570271 1755 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
COL8A1P27658 PDE8B-208ENST00000505283 3474 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
COL8A1P27658 KRT222-202ENST00000394052 1712 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
COL8A1P27658 LINC01362-202ENST00000452901 1712 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
COL8A1P27658 HMBOX1-211ENST00000524238 1731 ntTSL 2 BASIC6.11□□□□□ -1.43
COL8A1P27658 RAB6C-AS1-201ENST00000412425 2454 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
Retrieved 100 of 98,524 protein–RNA pairs in 101.4 ms