Protein–RNA interactions for Protein: Q9UMD9

COL17A1, Collagen alpha-1(XVII) chain, humanhuman

Predicted RBP Predictions only

Length 1,497 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1Q9UMD9 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC29.53■■■□□ 2.32
COL17A1Q9UMD9 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC29.53■■■□□ 2.32
COL17A1Q9UMD9 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC29.53■■■□□ 2.32
COL17A1Q9UMD9 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC29.53■■■□□ 2.32
COL17A1Q9UMD9 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC29.53■■■□□ 2.32
COL17A1Q9UMD9 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC29.53■■■□□ 2.32
COL17A1Q9UMD9 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC29.53■■■□□ 2.32
COL17A1Q9UMD9 FOSL1P1-201ENST00000511041 816 ntBASIC29.53■■■□□ 2.32
COL17A1Q9UMD9 ABR-217ENST00000572441 563 ntTSL 4 BASIC29.53■■■□□ 2.32
COL17A1Q9UMD9 RPL27-206ENST00000589913 697 ntAPPRIS P1 TSL 1 (best) BASIC29.53■■■□□ 2.32
COL17A1Q9UMD9 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC29.53■■■□□ 2.32
COL17A1Q9UMD9 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC29.52■■■□□ 2.32
COL17A1Q9UMD9 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC29.52■■■□□ 2.32
COL17A1Q9UMD9 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC29.52■■■□□ 2.32
COL17A1Q9UMD9 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC29.52■■■□□ 2.32
COL17A1Q9UMD9 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC29.52■■■□□ 2.32
COL17A1Q9UMD9 RBX1-201ENST00000216225 1188 ntAPPRIS P1 TSL 1 (best) BASIC29.52■■■□□ 2.32
COL17A1Q9UMD9 ELANE-201ENST00000263621 920 ntAPPRIS P1 TSL 1 (best) BASIC29.52■■■□□ 2.32
COL17A1Q9UMD9 ILF2-202ENST00000368681 726 ntTSL 2 BASIC29.52■■■□□ 2.32
COL17A1Q9UMD9 FAM220CP-201ENST00000395253 831 ntBASIC29.52■■■□□ 2.32
COL17A1Q9UMD9 MIR1233-2-201ENST00000408138 82 ntBASIC29.52■■■□□ 2.32
COL17A1Q9UMD9 MIR1233-1-201ENST00000408722 82 ntBASIC29.52■■■□□ 2.32
COL17A1Q9UMD9 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC29.52■■■□□ 2.32
COL17A1Q9UMD9 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC29.52■■■□□ 2.32
COL17A1Q9UMD9 KRT8P26-201ENST00000534154 1276 ntBASIC29.52■■■□□ 2.32
COL17A1Q9UMD9 PNN-202ENST00000553331 656 ntTSL 3 BASIC29.52■■■□□ 2.32
COL17A1Q9UMD9 IL11-204ENST00000590625 1028 ntTSL 2 BASIC29.52■■■□□ 2.32
COL17A1Q9UMD9 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC29.52■■■□□ 2.32
COL17A1Q9UMD9 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC29.52■■■□□ 2.32
COL17A1Q9UMD9 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC29.51■■■□□ 2.32
COL17A1Q9UMD9 AKR1C7P-201ENST00000305623 895 ntBASIC29.51■■■□□ 2.31
COL17A1Q9UMD9 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC29.51■■■□□ 2.31
COL17A1Q9UMD9 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC29.51■■■□□ 2.31
COL17A1Q9UMD9 DRAXINP1-201ENST00000437611 948 ntBASIC29.51■■■□□ 2.31
COL17A1Q9UMD9 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC29.51■■■□□ 2.31
COL17A1Q9UMD9 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC29.51■■■□□ 2.31
COL17A1Q9UMD9 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC29.51■■■□□ 2.31
COL17A1Q9UMD9 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC29.51■■■□□ 2.31
COL17A1Q9UMD9 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC29.51■■■□□ 2.31
COL17A1Q9UMD9 AL121772.3-201ENST00000610840 674 ntBASIC29.51■■■□□ 2.31
COL17A1Q9UMD9 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC29.51■■■□□ 2.31
COL17A1Q9UMD9 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC29.51■■■□□ 2.31
COL17A1Q9UMD9 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC29.51■■■□□ 2.31
COL17A1Q9UMD9 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC29.51■■■□□ 2.31
COL17A1Q9UMD9 EP400NL-214ENST00000641289 2402 ntBASIC29.51■■■□□ 2.31
COL17A1Q9UMD9 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC29.5■■■□□ 2.31
COL17A1Q9UMD9 TSPY2-201ENST00000320701 1161 ntAPPRIS P5 TSL 1 (best) BASIC29.5■■■□□ 2.31
COL17A1Q9UMD9 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC29.5■■■□□ 2.31
COL17A1Q9UMD9 GLIPR1L1-202ENST00000378695 885 ntAPPRIS ALT2 TSL 1 (best) BASIC29.5■■■□□ 2.31
COL17A1Q9UMD9 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC29.5■■■□□ 2.31
COL17A1Q9UMD9 TSPY2-203ENST00000429039 779 ntAPPRIS ALT2 TSL 2 BASIC29.5■■■□□ 2.31
COL17A1Q9UMD9 AC139887.2-202ENST00000507446 534 ntTSL 4 BASIC29.5■■■□□ 2.31
COL17A1Q9UMD9 AC010226.1-202ENST00000508517 539 ntTSL 2 BASIC29.5■■■□□ 2.31
COL17A1Q9UMD9 CIB2-208ENST00000560618 804 ntTSL 2 BASIC29.5■■■□□ 2.31
COL17A1Q9UMD9 CYP1B1-AS1-214ENST00000620177 554 ntTSL 4 BASIC29.5■■■□□ 2.31
COL17A1Q9UMD9 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC29.5■■■□□ 2.31
COL17A1Q9UMD9 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC29.5■■■□□ 2.31
COL17A1Q9UMD9 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC29.5■■■□□ 2.31
COL17A1Q9UMD9 KRT8P41-201ENST00000533985 1514 ntBASIC29.5■■■□□ 2.31
COL17A1Q9UMD9 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC29.5■■■□□ 2.31
COL17A1Q9UMD9 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC29.5■■■□□ 2.31
COL17A1Q9UMD9 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC29.49■■■□□ 2.31
COL17A1Q9UMD9 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC29.49■■■□□ 2.31
COL17A1Q9UMD9 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC29.49■■■□□ 2.31
COL17A1Q9UMD9 GNB1L-203ENST00000405009 1076 ntTSL 1 (best) BASIC29.49■■■□□ 2.31
COL17A1Q9UMD9 SCRN1-203ENST00000409570 535 ntTSL 4 BASIC29.49■■■□□ 2.31
COL17A1Q9UMD9 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC29.49■■■□□ 2.31
COL17A1Q9UMD9 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC29.49■■■□□ 2.31
COL17A1Q9UMD9 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC29.49■■■□□ 2.31
COL17A1Q9UMD9 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC29.49■■■□□ 2.31
COL17A1Q9UMD9 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC29.49■■■□□ 2.31
COL17A1Q9UMD9 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC29.49■■■□□ 2.31
COL17A1Q9UMD9 EPOR-201ENST00000222139 2411 ntAPPRIS P1 TSL 1 (best) BASIC29.49■■■□□ 2.31
COL17A1Q9UMD9 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC29.49■■■□□ 2.31
COL17A1Q9UMD9 IL9RP2-201ENST00000423948 1312 ntBASIC29.49■■■□□ 2.31
COL17A1Q9UMD9 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC29.49■■■□□ 2.31
COL17A1Q9UMD9 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC29.49■■■□□ 2.31
COL17A1Q9UMD9 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC29.48■■■□□ 2.31
COL17A1Q9UMD9 CELA2A-201ENST00000359621 919 ntAPPRIS P1 TSL 1 (best) BASIC29.48■■■□□ 2.31
COL17A1Q9UMD9 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC29.48■■■□□ 2.31
COL17A1Q9UMD9 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC29.48■■■□□ 2.31
COL17A1Q9UMD9 GGTLC2-203ENST00000480559 657 ntTSL 1 (best) BASIC29.48■■■□□ 2.31
COL17A1Q9UMD9 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC29.48■■■□□ 2.31
COL17A1Q9UMD9 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC29.48■■■□□ 2.31
COL17A1Q9UMD9 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC29.48■■■□□ 2.31
COL17A1Q9UMD9 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC29.48■■■□□ 2.31
COL17A1Q9UMD9 AC093525.10-201ENST00000625130 1569 ntBASIC29.48■■■□□ 2.31
COL17A1Q9UMD9 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC29.48■■■□□ 2.31
COL17A1Q9UMD9 MOS-201ENST00000311923 1041 ntAPPRIS P1 BASIC29.48■■■□□ 2.31
COL17A1Q9UMD9 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC29.48■■■□□ 2.31
COL17A1Q9UMD9 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC29.47■■■□□ 2.31
COL17A1Q9UMD9 AL121603.2-201ENST00000557373 2117 ntBASIC29.47■■■□□ 2.31
COL17A1Q9UMD9 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC29.47■■■□□ 2.31
COL17A1Q9UMD9 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC29.47■■■□□ 2.31
COL17A1Q9UMD9 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC29.47■■■□□ 2.31
COL17A1Q9UMD9 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC29.47■■■□□ 2.31
COL17A1Q9UMD9 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC29.47■■■□□ 2.31
COL17A1Q9UMD9 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC29.47■■■□□ 2.31
COL17A1Q9UMD9 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC29.47■■■□□ 2.31
COL17A1Q9UMD9 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC29.46■■■□□ 2.31
Retrieved 100 of 98,524 protein–RNA pairs in 22.3 ms