Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
TRIM39Q9HCM9 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
TRIM39Q9HCM9 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC19.26■□□□□ 0.67
TRIM39Q9HCM9 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
TRIM39Q9HCM9 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC19.26■□□□□ 0.67
TRIM39Q9HCM9 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC19.26■□□□□ 0.67
TRIM39Q9HCM9 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
TRIM39Q9HCM9 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC19.26■□□□□ 0.67
TRIM39Q9HCM9 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC19.26■□□□□ 0.67
TRIM39Q9HCM9 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC19.26■□□□□ 0.67
TRIM39Q9HCM9 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
TRIM39Q9HCM9 LINC02167-201ENST00000562769 594 ntTSL 3 BASIC19.26■□□□□ 0.67
TRIM39Q9HCM9 MIR4497-201ENST00000583208 89 ntBASIC19.26■□□□□ 0.67
TRIM39Q9HCM9 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC19.26■□□□□ 0.67
TRIM39Q9HCM9 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC19.26■□□□□ 0.67
TRIM39Q9HCM9 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC19.26■□□□□ 0.67
TRIM39Q9HCM9 AC138932.1-201ENST00000534164 6830 ntBASIC19.26■□□□□ 0.67
TRIM39Q9HCM9 DDRGK1-201ENST00000354488 1306 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
TRIM39Q9HCM9 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC19.25■□□□□ 0.67
TRIM39Q9HCM9 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
TRIM39Q9HCM9 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
TRIM39Q9HCM9 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC19.25■□□□□ 0.67
TRIM39Q9HCM9 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC19.25■□□□□ 0.67
TRIM39Q9HCM9 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
TRIM39Q9HCM9 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
TRIM39Q9HCM9 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
TRIM39Q9HCM9 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
TRIM39Q9HCM9 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
TRIM39Q9HCM9 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC19.25■□□□□ 0.67
TRIM39Q9HCM9 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC19.25■□□□□ 0.67
TRIM39Q9HCM9 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC19.25■□□□□ 0.67
TRIM39Q9HCM9 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
TRIM39Q9HCM9 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
TRIM39Q9HCM9 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC19.25■□□□□ 0.67
TRIM39Q9HCM9 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC19.25■□□□□ 0.67
TRIM39Q9HCM9 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC19.25■□□□□ 0.67
TRIM39Q9HCM9 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC19.25■□□□□ 0.67
TRIM39Q9HCM9 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC19.25■□□□□ 0.67
TRIM39Q9HCM9 CD177P1-201ENST00000606252 935 ntBASIC19.25■□□□□ 0.67
TRIM39Q9HCM9 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC19.25■□□□□ 0.67
TRIM39Q9HCM9 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC19.25■□□□□ 0.67
TRIM39Q9HCM9 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC19.25■□□□□ 0.67
TRIM39Q9HCM9 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
TRIM39Q9HCM9 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
TRIM39Q9HCM9 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
TRIM39Q9HCM9 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
TRIM39Q9HCM9 ME2-218ENST00000640965 2476 ntTSL 5 BASIC19.25■□□□□ 0.67
TRIM39Q9HCM9 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
TRIM39Q9HCM9 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
TRIM39Q9HCM9 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
TRIM39Q9HCM9 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
TRIM39Q9HCM9 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC19.24■□□□□ 0.67
TRIM39Q9HCM9 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC19.24■□□□□ 0.67
TRIM39Q9HCM9 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC19.24■□□□□ 0.67
TRIM39Q9HCM9 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
TRIM39Q9HCM9 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
TRIM39Q9HCM9 FAM197Y1-201ENST00000421178 764 ntBASIC19.24■□□□□ 0.67
TRIM39Q9HCM9 SNORA78-201ENST00000459373 127 ntBASIC19.24■□□□□ 0.67
TRIM39Q9HCM9 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC19.24■□□□□ 0.67
TRIM39Q9HCM9 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC19.24■□□□□ 0.67
TRIM39Q9HCM9 AL445675.2-201ENST00000620291 557 ntBASIC19.24■□□□□ 0.67
TRIM39Q9HCM9 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
TRIM39Q9HCM9 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
TRIM39Q9HCM9 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
TRIM39Q9HCM9 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC19.24■□□□□ 0.67
TRIM39Q9HCM9 SRI-203ENST00000419179 1307 ntTSL 2 BASIC19.24■□□□□ 0.67
TRIM39Q9HCM9 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
TRIM39Q9HCM9 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
TRIM39Q9HCM9 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC19.23■□□□□ 0.67
TRIM39Q9HCM9 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
TRIM39Q9HCM9 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
TRIM39Q9HCM9 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
TRIM39Q9HCM9 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
TRIM39Q9HCM9 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
TRIM39Q9HCM9 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
TRIM39Q9HCM9 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC19.23■□□□□ 0.67
TRIM39Q9HCM9 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC19.23■□□□□ 0.67
TRIM39Q9HCM9 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
TRIM39Q9HCM9 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
TRIM39Q9HCM9 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC19.23■□□□□ 0.67
TRIM39Q9HCM9 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC19.23■□□□□ 0.67
TRIM39Q9HCM9 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC19.23■□□□□ 0.67
TRIM39Q9HCM9 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC19.23■□□□□ 0.67
TRIM39Q9HCM9 PENK-204ENST00000518770 863 ntTSL 2 BASIC19.23■□□□□ 0.67
TRIM39Q9HCM9 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC19.23■□□□□ 0.67
TRIM39Q9HCM9 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC19.23■□□□□ 0.67
TRIM39Q9HCM9 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
TRIM39Q9HCM9 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC19.23■□□□□ 0.67
TRIM39Q9HCM9 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC19.23■□□□□ 0.67
TRIM39Q9HCM9 CR392000.1-201ENST00000624770 1228 ntBASIC19.23■□□□□ 0.67
TRIM39Q9HCM9 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC19.23■□□□□ 0.67
TRIM39Q9HCM9 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC19.23■□□□□ 0.67
TRIM39Q9HCM9 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
TRIM39Q9HCM9 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC19.23■□□□□ 0.67
TRIM39Q9HCM9 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
TRIM39Q9HCM9 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC19.23■□□□□ 0.67
TRIM39Q9HCM9 KRT16P1-201ENST00000399124 1418 ntBASIC19.23■□□□□ 0.67
TRIM39Q9HCM9 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
TRIM39Q9HCM9 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
TRIM39Q9HCM9 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 20.3 ms