Protein–RNA interactions for Protein: Q9C037

TRIM4, E3 ubiquitin-protein ligase TRIM4, humanhuman

Predictions only

Length 500 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM4Q9C037 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC19.31■□□□□ 0.68
TRIM4Q9C037 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
TRIM4Q9C037 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC19.31■□□□□ 0.68
TRIM4Q9C037 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC19.31■□□□□ 0.68
TRIM4Q9C037 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC19.31■□□□□ 0.68
TRIM4Q9C037 DAG1-219ENST00000538711 5582 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
TRIM4Q9C037 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
TRIM4Q9C037 B3GNT9-201ENST00000449549 2917 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
TRIM4Q9C037 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
TRIM4Q9C037 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC19.31■□□□□ 0.68
TRIM4Q9C037 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
TRIM4Q9C037 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC19.31■□□□□ 0.68
TRIM4Q9C037 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
TRIM4Q9C037 AC092718.1-201ENST00000501068 1088 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
TRIM4Q9C037 AC007322.4-201ENST00000509611 723 ntBASIC19.31■□□□□ 0.68
TRIM4Q9C037 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC19.31■□□□□ 0.68
TRIM4Q9C037 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC19.31■□□□□ 0.68
TRIM4Q9C037 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC19.31■□□□□ 0.68
TRIM4Q9C037 LANCL3-201ENST00000378619 3063 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
TRIM4Q9C037 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC19.31■□□□□ 0.68
TRIM4Q9C037 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
TRIM4Q9C037 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
TRIM4Q9C037 FGFR1-206ENST00000397091 5702 ntAPPRIS ALT1 TSL 1 (best) BASIC19.31■□□□□ 0.68
TRIM4Q9C037 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC19.31■□□□□ 0.68
TRIM4Q9C037 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
TRIM4Q9C037 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
TRIM4Q9C037 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
TRIM4Q9C037 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
TRIM4Q9C037 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
TRIM4Q9C037 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC19.3■□□□□ 0.68
TRIM4Q9C037 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC19.3■□□□□ 0.68
TRIM4Q9C037 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
TRIM4Q9C037 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC19.3■□□□□ 0.68
TRIM4Q9C037 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC19.3■□□□□ 0.68
TRIM4Q9C037 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
TRIM4Q9C037 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC19.3■□□□□ 0.68
TRIM4Q9C037 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
TRIM4Q9C037 SERPINH1P1-201ENST00000419794 1249 ntBASIC19.3■□□□□ 0.68
TRIM4Q9C037 PTPA-214ENST00000423100 988 ntTSL 2 BASIC19.3■□□□□ 0.68
TRIM4Q9C037 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC19.3■□□□□ 0.68
TRIM4Q9C037 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC19.3■□□□□ 0.68
TRIM4Q9C037 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC19.3■□□□□ 0.68
TRIM4Q9C037 NOC2LP1-202ENST00000452600 2235 ntBASIC19.3■□□□□ 0.68
TRIM4Q9C037 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC19.3■□□□□ 0.68
TRIM4Q9C037 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
TRIM4Q9C037 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
TRIM4Q9C037 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC19.3■□□□□ 0.68
TRIM4Q9C037 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC19.3■□□□□ 0.68
TRIM4Q9C037 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC19.3■□□□□ 0.68
TRIM4Q9C037 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC19.3■□□□□ 0.68
TRIM4Q9C037 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
TRIM4Q9C037 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
TRIM4Q9C037 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC19.29■□□□□ 0.68
TRIM4Q9C037 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
TRIM4Q9C037 TMEM255B-202ENST00000375353 6100 ntAPPRIS P2 TSL 1 (best) BASIC19.29■□□□□ 0.68
TRIM4Q9C037 ZNF865-201ENST00000568956 4005 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
TRIM4Q9C037 ADORA2A-201ENST00000337539 2569 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
TRIM4Q9C037 ASB18-201ENST00000409749 1401 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
TRIM4Q9C037 RBM17P2-201ENST00000616397 1405 ntBASIC19.29■□□□□ 0.68
TRIM4Q9C037 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
TRIM4Q9C037 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
TRIM4Q9C037 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
TRIM4Q9C037 OGG1-209ENST00000383826 1069 ntTSL 5 BASIC19.29■□□□□ 0.68
TRIM4Q9C037 AC091799.1-201ENST00000422823 811 ntBASIC19.29■□□□□ 0.68
TRIM4Q9C037 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC19.29■□□□□ 0.68
TRIM4Q9C037 AC073050.1-201ENST00000442316 462 ntTSL 3 BASIC19.29■□□□□ 0.68
TRIM4Q9C037 ELOVL2-AS1-201ENST00000456190 737 ntTSL 3 BASIC19.29■□□□□ 0.68
TRIM4Q9C037 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC19.29■□□□□ 0.68
TRIM4Q9C037 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC19.29■□□□□ 0.68
TRIM4Q9C037 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC19.29■□□□□ 0.68
TRIM4Q9C037 RPPH1-201ENST00000516869 333 ntBASIC19.29■□□□□ 0.68
TRIM4Q9C037 AL354712.1-201ENST00000563570 477 ntTSL 3 BASIC19.29■□□□□ 0.68
TRIM4Q9C037 CLN6-206ENST00000565471 1075 ntTSL 2 BASIC19.29■□□□□ 0.68
TRIM4Q9C037 SPIB-206ENST00000596074 847 ntTSL 2 BASIC19.29■□□□□ 0.68
TRIM4Q9C037 AC120498.10-201ENST00000621827 505 ntBASIC19.29■□□□□ 0.68
TRIM4Q9C037 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
TRIM4Q9C037 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
TRIM4Q9C037 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC19.29■□□□□ 0.68
TRIM4Q9C037 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
TRIM4Q9C037 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC19.29■□□□□ 0.68
TRIM4Q9C037 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC19.29■□□□□ 0.68
TRIM4Q9C037 SPAST-202ENST00000345662 5116 ntAPPRIS ALT1 TSL 1 (best) BASIC19.29■□□□□ 0.68
TRIM4Q9C037 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC19.29■□□□□ 0.68
TRIM4Q9C037 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
TRIM4Q9C037 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC19.29■□□□□ 0.68
TRIM4Q9C037 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC19.29■□□□□ 0.68
TRIM4Q9C037 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
TRIM4Q9C037 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
TRIM4Q9C037 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
TRIM4Q9C037 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC19.28■□□□□ 0.68
TRIM4Q9C037 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
TRIM4Q9C037 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
TRIM4Q9C037 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC19.28■□□□□ 0.68
TRIM4Q9C037 A3GALT2-201ENST00000442999 1023 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
TRIM4Q9C037 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC19.28■□□□□ 0.68
TRIM4Q9C037 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC19.28■□□□□ 0.68
TRIM4Q9C037 AC243732.1-201ENST00000612648 864 ntBASIC19.28■□□□□ 0.68
TRIM4Q9C037 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC19.28■□□□□ 0.68
TRIM4Q9C037 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
TRIM4Q9C037 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC19.28■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 18 ms