Protein–RNA interactions for Protein: Q8TAU0

NKX2-3, Homeobox protein Nkx-2.3, humanhuman

Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-3Q8TAU0 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
NKX2-3Q8TAU0 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC23.05■■□□□ 1.28
NKX2-3Q8TAU0 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
NKX2-3Q8TAU0 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC23.04■■□□□ 1.28
NKX2-3Q8TAU0 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
NKX2-3Q8TAU0 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
NKX2-3Q8TAU0 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
NKX2-3Q8TAU0 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
NKX2-3Q8TAU0 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC23.04■■□□□ 1.28
NKX2-3Q8TAU0 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC23.04■■□□□ 1.28
NKX2-3Q8TAU0 UFD1-202ENST00000399523 1007 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
NKX2-3Q8TAU0 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC23.04■■□□□ 1.28
NKX2-3Q8TAU0 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
NKX2-3Q8TAU0 NBPF14-202ENST00000593495 1082 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
NKX2-3Q8TAU0 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC23.04■■□□□ 1.28
NKX2-3Q8TAU0 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
NKX2-3Q8TAU0 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC23.04■■□□□ 1.28
NKX2-3Q8TAU0 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC23.04■■□□□ 1.28
NKX2-3Q8TAU0 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC23.04■■□□□ 1.28
NKX2-3Q8TAU0 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
NKX2-3Q8TAU0 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC23.03■■□□□ 1.28
NKX2-3Q8TAU0 LINC01568-207ENST00000641790 1380 ntBASIC23.03■■□□□ 1.28
NKX2-3Q8TAU0 UNC93B2-201ENST00000285383 730 ntBASIC23.03■■□□□ 1.28
NKX2-3Q8TAU0 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC23.03■■□□□ 1.28
NKX2-3Q8TAU0 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC23.03■■□□□ 1.28
NKX2-3Q8TAU0 AC087388.1-201ENST00000571370 1112 ntBASIC23.03■■□□□ 1.28
NKX2-3Q8TAU0 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC23.03■■□□□ 1.28
NKX2-3Q8TAU0 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC23.03■■□□□ 1.28
NKX2-3Q8TAU0 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC23.03■■□□□ 1.28
NKX2-3Q8TAU0 HLA-A-209ENST00000638375 975 ntBASIC23.03■■□□□ 1.28
NKX2-3Q8TAU0 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC23.03■■□□□ 1.28
NKX2-3Q8TAU0 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC23.03■■□□□ 1.28
NKX2-3Q8TAU0 KRT18P22-201ENST00000402024 1347 ntBASIC23.03■■□□□ 1.28
NKX2-3Q8TAU0 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC23.03■■□□□ 1.28
NKX2-3Q8TAU0 POLI-202ENST00000406285 2030 ntTSL 2 BASIC23.03■■□□□ 1.28
NKX2-3Q8TAU0 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
NKX2-3Q8TAU0 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC23.02■■□□□ 1.28
NKX2-3Q8TAU0 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC23.02■■□□□ 1.28
NKX2-3Q8TAU0 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC23.02■■□□□ 1.28
NKX2-3Q8TAU0 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
NKX2-3Q8TAU0 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
NKX2-3Q8TAU0 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
NKX2-3Q8TAU0 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC23.02■■□□□ 1.28
NKX2-3Q8TAU0 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
NKX2-3Q8TAU0 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
NKX2-3Q8TAU0 KRT18P57-201ENST00000443599 1254 ntBASIC23.02■■□□□ 1.28
NKX2-3Q8TAU0 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC23.02■■□□□ 1.28
NKX2-3Q8TAU0 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC23.02■■□□□ 1.28
NKX2-3Q8TAU0 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC23.02■■□□□ 1.28
NKX2-3Q8TAU0 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC23.02■■□□□ 1.28
NKX2-3Q8TAU0 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC23.02■■□□□ 1.28
NKX2-3Q8TAU0 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC23.02■■□□□ 1.28
NKX2-3Q8TAU0 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC23.02■■□□□ 1.28
NKX2-3Q8TAU0 NTF6B-201ENST00000591913 560 ntBASIC23.02■■□□□ 1.28
NKX2-3Q8TAU0 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC23.02■■□□□ 1.28
NKX2-3Q8TAU0 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC23.02■■□□□ 1.28
NKX2-3Q8TAU0 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC23.02■■□□□ 1.28
NKX2-3Q8TAU0 SRI-203ENST00000419179 1307 ntTSL 2 BASIC23.02■■□□□ 1.28
NKX2-3Q8TAU0 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC23.02■■□□□ 1.28
NKX2-3Q8TAU0 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC23.02■■□□□ 1.28
NKX2-3Q8TAU0 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
NKX2-3Q8TAU0 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
NKX2-3Q8TAU0 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
NKX2-3Q8TAU0 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
NKX2-3Q8TAU0 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
NKX2-3Q8TAU0 Z82202.1-201ENST00000623446 1880 ntBASIC23.01■■□□□ 1.27
NKX2-3Q8TAU0 PLCG1-AS1-201ENST00000454626 1462 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
NKX2-3Q8TAU0 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
NKX2-3Q8TAU0 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
NKX2-3Q8TAU0 UBL5-201ENST00000358666 513 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
NKX2-3Q8TAU0 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
NKX2-3Q8TAU0 RBM17P1-201ENST00000453646 1190 ntBASIC23.01■■□□□ 1.27
NKX2-3Q8TAU0 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
NKX2-3Q8TAU0 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC23.01■■□□□ 1.27
NKX2-3Q8TAU0 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC23.01■■□□□ 1.27
NKX2-3Q8TAU0 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC23.01■■□□□ 1.27
NKX2-3Q8TAU0 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC23.01■■□□□ 1.27
NKX2-3Q8TAU0 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC23.01■■□□□ 1.27
NKX2-3Q8TAU0 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC23.01■■□□□ 1.27
NKX2-3Q8TAU0 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC23.01■■□□□ 1.27
NKX2-3Q8TAU0 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC23.01■■□□□ 1.27
NKX2-3Q8TAU0 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
NKX2-3Q8TAU0 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
NKX2-3Q8TAU0 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC23■■□□□ 1.27
NKX2-3Q8TAU0 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC23■■□□□ 1.27
NKX2-3Q8TAU0 CAMKV-205ENST00000467248 1688 ntTSL 2 BASIC23■■□□□ 1.27
NKX2-3Q8TAU0 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC23■■□□□ 1.27
NKX2-3Q8TAU0 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC23■■□□□ 1.27
NKX2-3Q8TAU0 TERF1P1-201ENST00000311003 1181 ntBASIC23■■□□□ 1.27
NKX2-3Q8TAU0 TUBB8P6-201ENST00000436895 1288 ntBASIC23■■□□□ 1.27
NKX2-3Q8TAU0 ZNF706-204ENST00000518336 501 ntAPPRIS P1 TSL 4 BASIC23■■□□□ 1.27
NKX2-3Q8TAU0 ABBA01031674.1-201ENST00000635145 728 ntBASIC23■■□□□ 1.27
NKX2-3Q8TAU0 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC23■■□□□ 1.27
NKX2-3Q8TAU0 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
NKX2-3Q8TAU0 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
NKX2-3Q8TAU0 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
NKX2-3Q8TAU0 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC23■■□□□ 1.27
NKX2-3Q8TAU0 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
NKX2-3Q8TAU0 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC22.99■■□□□ 1.27
NKX2-3Q8TAU0 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC22.99■■□□□ 1.27
Retrieved 100 of 98,524 protein–RNA pairs in 33 ms