Protein–RNA interactions for Protein: Q8IYX3

CCDC116, Coiled-coil domain-containing protein 116, humanhuman

Predictions only

Length 515 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC116Q8IYX3 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC18.3■□□□□ 0.52
CCDC116Q8IYX3 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CCDC116Q8IYX3 C15orf48-201ENST00000344300 875 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CCDC116Q8IYX3 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
CCDC116Q8IYX3 TUBB8P6-201ENST00000436895 1288 ntBASIC18.3■□□□□ 0.52
CCDC116Q8IYX3 F2R-202ENST00000505600 442 ntTSL 2 BASIC18.3■□□□□ 0.52
CCDC116Q8IYX3 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC18.3■□□□□ 0.52
CCDC116Q8IYX3 KRT18P16-201ENST00000510337 1294 ntBASIC18.3■□□□□ 0.52
CCDC116Q8IYX3 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC18.3■□□□□ 0.52
CCDC116Q8IYX3 MIR4651-201ENST00000582622 73 ntBASIC18.3■□□□□ 0.52
CCDC116Q8IYX3 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
CCDC116Q8IYX3 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC18.3■□□□□ 0.52
CCDC116Q8IYX3 KRT8P8-201ENST00000434750 1448 ntBASIC18.3■□□□□ 0.52
CCDC116Q8IYX3 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
CCDC116Q8IYX3 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC18.3■□□□□ 0.52
CCDC116Q8IYX3 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC18.3■□□□□ 0.52
CCDC116Q8IYX3 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC18.3■□□□□ 0.52
CCDC116Q8IYX3 AL032819.2-201ENST00000624543 2162 ntBASIC18.3■□□□□ 0.52
CCDC116Q8IYX3 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
CCDC116Q8IYX3 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CCDC116Q8IYX3 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
CCDC116Q8IYX3 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CCDC116Q8IYX3 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CCDC116Q8IYX3 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
CCDC116Q8IYX3 NBPF21P-201ENST00000425093 1451 ntBASIC18.29■□□□□ 0.52
CCDC116Q8IYX3 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC18.29■□□□□ 0.52
CCDC116Q8IYX3 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CCDC116Q8IYX3 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
CCDC116Q8IYX3 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC18.29■□□□□ 0.52
CCDC116Q8IYX3 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
CCDC116Q8IYX3 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC18.29■□□□□ 0.52
CCDC116Q8IYX3 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC18.29■□□□□ 0.52
CCDC116Q8IYX3 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC18.29■□□□□ 0.52
CCDC116Q8IYX3 ADM-205ENST00000528544 586 ntTSL 2 BASIC18.29■□□□□ 0.52
CCDC116Q8IYX3 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC18.29■□□□□ 0.52
CCDC116Q8IYX3 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC18.29■□□□□ 0.52
CCDC116Q8IYX3 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC18.29■□□□□ 0.52
CCDC116Q8IYX3 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC18.29■□□□□ 0.52
CCDC116Q8IYX3 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
CCDC116Q8IYX3 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
CCDC116Q8IYX3 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CCDC116Q8IYX3 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
CCDC116Q8IYX3 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CCDC116Q8IYX3 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
CCDC116Q8IYX3 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
CCDC116Q8IYX3 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
CCDC116Q8IYX3 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CCDC116Q8IYX3 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
CCDC116Q8IYX3 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC18.28■□□□□ 0.52
CCDC116Q8IYX3 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CCDC116Q8IYX3 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CCDC116Q8IYX3 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
CCDC116Q8IYX3 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
CCDC116Q8IYX3 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CCDC116Q8IYX3 RRAS-201ENST00000246792 1044 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CCDC116Q8IYX3 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC18.28■□□□□ 0.52
CCDC116Q8IYX3 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC18.28■□□□□ 0.52
CCDC116Q8IYX3 AC006058.3-201ENST00000606217 1069 ntBASIC18.28■□□□□ 0.52
CCDC116Q8IYX3 AL023875.1-201ENST00000640777 796 ntBASIC18.28■□□□□ 0.52
CCDC116Q8IYX3 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC18.28■□□□□ 0.52
CCDC116Q8IYX3 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC18.28■□□□□ 0.52
CCDC116Q8IYX3 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
CCDC116Q8IYX3 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
CCDC116Q8IYX3 GPS2-201ENST00000380728 1379 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CCDC116Q8IYX3 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CCDC116Q8IYX3 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC18.28■□□□□ 0.52
CCDC116Q8IYX3 FAM117B-201ENST00000392238 5763 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CCDC116Q8IYX3 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CCDC116Q8IYX3 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC18.28■□□□□ 0.52
CCDC116Q8IYX3 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CCDC116Q8IYX3 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.52
CCDC116Q8IYX3 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC18.27■□□□□ 0.52
CCDC116Q8IYX3 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CCDC116Q8IYX3 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC18.27■□□□□ 0.52
CCDC116Q8IYX3 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC18.27■□□□□ 0.52
CCDC116Q8IYX3 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC18.27■□□□□ 0.52
CCDC116Q8IYX3 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC18.27■□□□□ 0.52
CCDC116Q8IYX3 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CCDC116Q8IYX3 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CCDC116Q8IYX3 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CCDC116Q8IYX3 NDUFA8-201ENST00000373768 844 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CCDC116Q8IYX3 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC18.27■□□□□ 0.52
CCDC116Q8IYX3 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC18.27■□□□□ 0.52
CCDC116Q8IYX3 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.52
CCDC116Q8IYX3 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC18.27■□□□□ 0.52
CCDC116Q8IYX3 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC18.27■□□□□ 0.52
CCDC116Q8IYX3 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
CCDC116Q8IYX3 AC009052.1-201ENST00000567090 298 ntTSL 3 BASIC18.27■□□□□ 0.52
CCDC116Q8IYX3 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC18.27■□□□□ 0.52
CCDC116Q8IYX3 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
CCDC116Q8IYX3 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC18.27■□□□□ 0.52
CCDC116Q8IYX3 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
CCDC116Q8IYX3 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
CCDC116Q8IYX3 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC18.27■□□□□ 0.51
CCDC116Q8IYX3 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
CCDC116Q8IYX3 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC18.27■□□□□ 0.51
CCDC116Q8IYX3 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
CCDC116Q8IYX3 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
CCDC116Q8IYX3 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CCDC116Q8IYX3 ZNF815P-204ENST00000434898 1737 ntBASIC18.26■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 32.4 ms