Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC12.17□□□□□ -0.46
LINC00643Q86TS7 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC12.17□□□□□ -0.46
LINC00643Q86TS7 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
LINC00643Q86TS7 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
LINC00643Q86TS7 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC12.17□□□□□ -0.46
LINC00643Q86TS7 PIGW-204ENST00000614443 2312 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
LINC00643Q86TS7 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
LINC00643Q86TS7 RHOBTB3-206ENST00000506817 1432 ntTSL 2 BASIC12.17□□□□□ -0.46
LINC00643Q86TS7 NARF-205ENST00000412079 1760 ntTSL 5 BASIC12.17□□□□□ -0.46
LINC00643Q86TS7 KCNMA1-201ENST00000286627 6194 ntAPPRIS P3 TSL 1 (best) BASIC12.17□□□□□ -0.46
LINC00643Q86TS7 RASIP1-201ENST00000222145 3308 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
LINC00643Q86TS7 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
LINC00643Q86TS7 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC12.17□□□□□ -0.46
LINC00643Q86TS7 AC008969.1-201ENST00000550135 6438 ntTSL 2 BASIC12.17□□□□□ -0.46
LINC00643Q86TS7 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC12.17□□□□□ -0.46
LINC00643Q86TS7 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC12.17□□□□□ -0.46
LINC00643Q86TS7 EVI5L-202ENST00000538904 2418 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
LINC00643Q86TS7 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC12.17□□□□□ -0.46
LINC00643Q86TS7 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC12.17□□□□□ -0.46
LINC00643Q86TS7 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
LINC00643Q86TS7 ARHGEF16-202ENST00000378373 2211 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
LINC00643Q86TS7 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC12.17□□□□□ -0.46
LINC00643Q86TS7 RBFOX1-212ENST00000550418 4775 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
LINC00643Q86TS7 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC12.17□□□□□ -0.46
LINC00643Q86TS7 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
LINC00643Q86TS7 VASN-201ENST00000304735 2806 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
LINC00643Q86TS7 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
LINC00643Q86TS7 ICA1L-201ENST00000358299 3457 ntAPPRIS P1 TSL 2 BASIC12.16□□□□□ -0.46
LINC00643Q86TS7 AC103702.1-201ENST00000548801 2630 ntBASIC12.16□□□□□ -0.46
LINC00643Q86TS7 SMPD5-203ENST00000639008 1464 ntBASIC12.16□□□□□ -0.46
LINC00643Q86TS7 MXD4-201ENST00000337190 4056 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
LINC00643Q86TS7 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
LINC00643Q86TS7 NFATC4-210ENST00000554050 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC12.16□□□□□ -0.46
LINC00643Q86TS7 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
LINC00643Q86TS7 SHISA6-202ENST00000409168 7262 ntAPPRIS ALT2 TSL 1 (best) BASIC12.16□□□□□ -0.46
LINC00643Q86TS7 MEGF6-201ENST00000294599 4501 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
LINC00643Q86TS7 ASTN2-205ENST00000361209 4622 ntAPPRIS P2 TSL 1 (best) BASIC12.16□□□□□ -0.46
LINC00643Q86TS7 LBH-205ENST00000407930 756 ntTSL 2 BASIC12.16□□□□□ -0.46
LINC00643Q86TS7 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
LINC00643Q86TS7 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
LINC00643Q86TS7 STX5-203ENST00000394690 1568 ntTSL 5 BASIC12.16□□□□□ -0.46
LINC00643Q86TS7 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
LINC00643Q86TS7 SLIT3-201ENST00000332966 4895 ntAPPRIS ALT2 TSL 1 (best) BASIC12.16□□□□□ -0.46
LINC00643Q86TS7 COL4A3BP-204ENST00000405807 2843 ntAPPRIS P1 TSL 5 BASIC12.16□□□□□ -0.46
LINC00643Q86TS7 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC12.16□□□□□ -0.46
LINC00643Q86TS7 CD5L-201ENST00000368174 2191 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
LINC00643Q86TS7 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC12.16□□□□□ -0.46
LINC00643Q86TS7 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC12.16□□□□□ -0.46
LINC00643Q86TS7 SUZ12-201ENST00000322652 4491 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
LINC00643Q86TS7 MIOS-202ENST00000405785 3095 ntAPPRIS P1 TSL 5 BASIC12.16□□□□□ -0.46
LINC00643Q86TS7 STAT5A-207ENST00000546010 3086 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
LINC00643Q86TS7 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC12.16□□□□□ -0.46
LINC00643Q86TS7 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC12.16□□□□□ -0.46
LINC00643Q86TS7 GCLM-201ENST00000370238 4857 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
LINC00643Q86TS7 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC12.15□□□□□ -0.46
LINC00643Q86TS7 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC12.15□□□□□ -0.46
LINC00643Q86TS7 QSOX1-201ENST00000367600 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC12.15□□□□□ -0.46
LINC00643Q86TS7 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC12.15□□□□□ -0.46
LINC00643Q86TS7 STK35-201ENST00000381482 6685 ntAPPRIS P1 TSL 5 BASIC12.15□□□□□ -0.46
LINC00643Q86TS7 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
LINC00643Q86TS7 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
LINC00643Q86TS7 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
LINC00643Q86TS7 GTF3C4-201ENST00000372146 9043 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
LINC00643Q86TS7 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
LINC00643Q86TS7 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
LINC00643Q86TS7 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
LINC00643Q86TS7 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC12.15□□□□□ -0.46
LINC00643Q86TS7 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
LINC00643Q86TS7 THEG-201ENST00000342640 1877 ntAPPRIS P4 TSL 1 (best) BASIC12.15□□□□□ -0.46
LINC00643Q86TS7 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC12.15□□□□□ -0.46
LINC00643Q86TS7 PAK4-202ENST00000358301 2739 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
LINC00643Q86TS7 PODNL1-204ENST00000538517 2744 ntTSL 2 BASIC12.15□□□□□ -0.46
LINC00643Q86TS7 AC093525.10-201ENST00000625130 1569 ntBASIC12.15□□□□□ -0.46
LINC00643Q86TS7 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC12.15□□□□□ -0.46
LINC00643Q86TS7 VAV2-202ENST00000371851 5101 ntAPPRIS ALT2 TSL 5 BASIC12.15□□□□□ -0.46
LINC00643Q86TS7 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC12.15□□□□□ -0.46
LINC00643Q86TS7 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC12.15□□□□□ -0.46
LINC00643Q86TS7 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC12.15□□□□□ -0.46
LINC00643Q86TS7 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC12.15□□□□□ -0.46
LINC00643Q86TS7 CAMTA1-201ENST00000303635 8444 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
LINC00643Q86TS7 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC12.15□□□□□ -0.46
LINC00643Q86TS7 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
LINC00643Q86TS7 MFF-207ENST00000409565 1548 ntTSL 2 BASIC12.15□□□□□ -0.46
LINC00643Q86TS7 FUS-201ENST00000254108 5119 ntAPPRIS P3 TSL 1 (best) BASIC12.15□□□□□ -0.46
LINC00643Q86TS7 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC12.15□□□□□ -0.46
LINC00643Q86TS7 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC12.15□□□□□ -0.46
LINC00643Q86TS7 GPC1-201ENST00000264039 3713 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
LINC00643Q86TS7 RALGDS-205ENST00000393160 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC12.15□□□□□ -0.46
LINC00643Q86TS7 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC12.15□□□□□ -0.46
LINC00643Q86TS7 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
LINC00643Q86TS7 CLSTN1-201ENST00000361311 4647 ntAPPRIS P3 TSL 1 (best) BASIC12.15□□□□□ -0.47
LINC00643Q86TS7 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC12.15□□□□□ -0.47
LINC00643Q86TS7 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC12.15□□□□□ -0.47
LINC00643Q86TS7 COQ8B-201ENST00000243583 2041 ntAPPRIS ALT2 TSL 1 (best) BASIC12.15□□□□□ -0.47
LINC00643Q86TS7 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.47
LINC00643Q86TS7 GPR161-202ENST00000367835 2400 ntAPPRIS P1 TSL 2 BASIC12.15□□□□□ -0.47
LINC00643Q86TS7 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.47
LINC00643Q86TS7 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
LINC00643Q86TS7 RBM47-202ENST00000381793 4816 ntAPPRIS ALT1 TSL 2 BASIC12.14□□□□□ -0.47
LINC00643Q86TS7 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Retrieved 100 of 98,524 protein–RNA pairs in 20.8 ms