Protein–RNA interactions for Protein: Q7Z407

CSMD3, CUB and sushi domain-containing protein 3, humanhuman

Predictions only

Length 3,707 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3Q7Z407 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC13.55□□□□□ -0.24
CSMD3Q7Z407 MICA-209ENST00000449934 1386 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
CSMD3Q7Z407 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC13.55□□□□□ -0.24
CSMD3Q7Z407 AP000593.1-201ENST00000393668 712 ntBASIC13.55□□□□□ -0.24
CSMD3Q7Z407 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC13.55□□□□□ -0.24
CSMD3Q7Z407 AC092597.1-201ENST00000487352 616 ntBASIC13.55□□□□□ -0.24
CSMD3Q7Z407 GLRB-205ENST00000512619 728 ntTSL 3 BASIC13.55□□□□□ -0.24
CSMD3Q7Z407 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
CSMD3Q7Z407 BIN1-205ENST00000351659 2365 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
CSMD3Q7Z407 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
CSMD3Q7Z407 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC13.55□□□□□ -0.24
CSMD3Q7Z407 ERF-202ENST00000440177 2032 ntTSL 2 BASIC13.54□□□□□ -0.24
CSMD3Q7Z407 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
CSMD3Q7Z407 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC13.54□□□□□ -0.24
CSMD3Q7Z407 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC13.54□□□□□ -0.24
CSMD3Q7Z407 GXYLT1P4-201ENST00000613576 1192 ntBASIC13.54□□□□□ -0.24
CSMD3Q7Z407 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC13.54□□□□□ -0.24
CSMD3Q7Z407 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC13.54□□□□□ -0.24
CSMD3Q7Z407 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
CSMD3Q7Z407 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC13.54□□□□□ -0.24
CSMD3Q7Z407 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
CSMD3Q7Z407 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC13.54□□□□□ -0.24
CSMD3Q7Z407 AP002469.2-201ENST00000531724 424 ntBASIC13.54□□□□□ -0.24
CSMD3Q7Z407 MIR3652-201ENST00000579335 131 ntBASIC13.54□□□□□ -0.24
CSMD3Q7Z407 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC13.54□□□□□ -0.24
CSMD3Q7Z407 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC13.54□□□□□ -0.24
CSMD3Q7Z407 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
CSMD3Q7Z407 ING5-202ENST00000406941 946 ntAPPRIS ALT1 TSL 1 (best) BASIC13.54□□□□□ -0.24
CSMD3Q7Z407 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
CSMD3Q7Z407 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
CSMD3Q7Z407 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
CSMD3Q7Z407 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC13.54□□□□□ -0.24
CSMD3Q7Z407 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.24
CSMD3Q7Z407 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
CSMD3Q7Z407 HMGN1P19-201ENST00000436976 333 ntBASIC13.53□□□□□ -0.24
CSMD3Q7Z407 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC13.53□□□□□ -0.24
CSMD3Q7Z407 TBCB-205ENST00000585746 875 ntTSL 3 BASIC13.53□□□□□ -0.24
CSMD3Q7Z407 SHBG-201ENST00000340624 1311 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
CSMD3Q7Z407 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
CSMD3Q7Z407 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
CSMD3Q7Z407 PSPH-201ENST00000275605 2131 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
CSMD3Q7Z407 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
CSMD3Q7Z407 TUBB8P6-201ENST00000436895 1288 ntBASIC13.53□□□□□ -0.24
CSMD3Q7Z407 AP002383.4-201ENST00000442518 975 ntBASIC13.53□□□□□ -0.24
CSMD3Q7Z407 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
CSMD3Q7Z407 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
CSMD3Q7Z407 TMEM179-206ENST00000616017 1645 ntBASIC13.53□□□□□ -0.24
CSMD3Q7Z407 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
CSMD3Q7Z407 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
CSMD3Q7Z407 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC13.53□□□□□ -0.24
CSMD3Q7Z407 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
CSMD3Q7Z407 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.24
CSMD3Q7Z407 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
CSMD3Q7Z407 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC13.53□□□□□ -0.24
CSMD3Q7Z407 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
CSMD3Q7Z407 LINC01311-201ENST00000565162 1445 ntBASIC13.53□□□□□ -0.24
CSMD3Q7Z407 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC13.53□□□□□ -0.24
CSMD3Q7Z407 HBZP1-201ENST00000354915 429 ntBASIC13.53□□□□□ -0.24
CSMD3Q7Z407 STARP1-201ENST00000397973 869 ntBASIC13.53□□□□□ -0.24
CSMD3Q7Z407 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC13.53□□□□□ -0.24
CSMD3Q7Z407 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC13.53□□□□□ -0.24
CSMD3Q7Z407 SLC25A6P4-201ENST00000586535 553 ntBASIC13.53□□□□□ -0.24
CSMD3Q7Z407 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC13.53□□□□□ -0.24
CSMD3Q7Z407 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.24
CSMD3Q7Z407 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC13.52□□□□□ -0.24
CSMD3Q7Z407 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
CSMD3Q7Z407 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC13.52□□□□□ -0.24
CSMD3Q7Z407 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC13.52□□□□□ -0.24
CSMD3Q7Z407 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC13.52□□□□□ -0.24
CSMD3Q7Z407 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC13.52□□□□□ -0.24
CSMD3Q7Z407 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC13.52□□□□□ -0.24
CSMD3Q7Z407 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC13.52□□□□□ -0.24
CSMD3Q7Z407 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC13.52□□□□□ -0.24
CSMD3Q7Z407 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC13.52□□□□□ -0.24
CSMD3Q7Z407 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC13.52□□□□□ -0.24
CSMD3Q7Z407 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC13.52□□□□□ -0.24
CSMD3Q7Z407 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC13.52□□□□□ -0.24
CSMD3Q7Z407 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC13.52□□□□□ -0.24
CSMD3Q7Z407 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
CSMD3Q7Z407 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC13.52□□□□□ -0.25
CSMD3Q7Z407 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC13.52□□□□□ -0.25
CSMD3Q7Z407 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
CSMD3Q7Z407 CA15P1-201ENST00000481698 905 ntBASIC13.52□□□□□ -0.25
CSMD3Q7Z407 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC13.52□□□□□ -0.25
CSMD3Q7Z407 FGF14-AS2-201ENST00000606448 1074 ntBASIC13.52□□□□□ -0.25
CSMD3Q7Z407 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC13.52□□□□□ -0.25
CSMD3Q7Z407 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC13.52□□□□□ -0.25
CSMD3Q7Z407 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC13.52□□□□□ -0.25
CSMD3Q7Z407 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
CSMD3Q7Z407 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
CSMD3Q7Z407 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
CSMD3Q7Z407 KISS1R-203ENST00000606939 964 ntTSL 5 BASIC13.52□□□□□ -0.25
CSMD3Q7Z407 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
CSMD3Q7Z407 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
CSMD3Q7Z407 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC13.52□□□□□ -0.25
CSMD3Q7Z407 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC13.52□□□□□ -0.25
CSMD3Q7Z407 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC13.51□□□□□ -0.25
CSMD3Q7Z407 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC13.51□□□□□ -0.25
CSMD3Q7Z407 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC13.51□□□□□ -0.25
CSMD3Q7Z407 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC13.51□□□□□ -0.25
Retrieved 100 of 98,524 protein–RNA pairs in 24 ms