Protein–RNA interactions for Protein: Q59EK9

RUNDC3A, RUN domain-containing protein 3A, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RUNDC3AQ59EK9 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
RUNDC3AQ59EK9 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC18.34■□□□□ 0.53
RUNDC3AQ59EK9 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
RUNDC3AQ59EK9 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC18.34■□□□□ 0.53
RUNDC3AQ59EK9 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC18.34■□□□□ 0.53
RUNDC3AQ59EK9 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
RUNDC3AQ59EK9 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
RUNDC3AQ59EK9 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.53
RUNDC3AQ59EK9 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.53
RUNDC3AQ59EK9 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
RUNDC3AQ59EK9 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
RUNDC3AQ59EK9 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
RUNDC3AQ59EK9 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC18.33■□□□□ 0.53
RUNDC3AQ59EK9 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.52
RUNDC3AQ59EK9 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.52
RUNDC3AQ59EK9 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
RUNDC3AQ59EK9 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
RUNDC3AQ59EK9 ISCU-212ENST00000547005 795 ntTSL 3 BASIC18.33■□□□□ 0.52
RUNDC3AQ59EK9 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC18.33■□□□□ 0.52
RUNDC3AQ59EK9 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.52
RUNDC3AQ59EK9 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
RUNDC3AQ59EK9 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC18.33■□□□□ 0.52
RUNDC3AQ59EK9 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC18.33■□□□□ 0.52
RUNDC3AQ59EK9 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC18.33■□□□□ 0.52
RUNDC3AQ59EK9 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC18.33■□□□□ 0.52
RUNDC3AQ59EK9 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
RUNDC3AQ59EK9 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
RUNDC3AQ59EK9 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC18.33■□□□□ 0.52
RUNDC3AQ59EK9 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
RUNDC3AQ59EK9 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC18.33■□□□□ 0.52
RUNDC3AQ59EK9 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC18.33■□□□□ 0.52
RUNDC3AQ59EK9 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC18.33■□□□□ 0.52
RUNDC3AQ59EK9 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.52
RUNDC3AQ59EK9 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
RUNDC3AQ59EK9 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
RUNDC3AQ59EK9 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC18.32■□□□□ 0.52
RUNDC3AQ59EK9 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC18.32■□□□□ 0.52
RUNDC3AQ59EK9 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
RUNDC3AQ59EK9 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
RUNDC3AQ59EK9 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
RUNDC3AQ59EK9 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
RUNDC3AQ59EK9 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
RUNDC3AQ59EK9 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
RUNDC3AQ59EK9 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC18.32■□□□□ 0.52
RUNDC3AQ59EK9 AC005181.1-201ENST00000604782 1256 ntBASIC18.32■□□□□ 0.52
RUNDC3AQ59EK9 ADK-206ENST00000541550 2222 ntTSL 2 BASIC18.32■□□□□ 0.52
RUNDC3AQ59EK9 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC18.32■□□□□ 0.52
RUNDC3AQ59EK9 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
RUNDC3AQ59EK9 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC18.32■□□□□ 0.52
RUNDC3AQ59EK9 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC18.32■□□□□ 0.52
RUNDC3AQ59EK9 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC18.32■□□□□ 0.52
RUNDC3AQ59EK9 CHST11-205ENST00000549260 5696 ntAPPRIS ALT1 TSL 1 (best) BASIC18.32■□□□□ 0.52
RUNDC3AQ59EK9 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC18.32■□□□□ 0.52
RUNDC3AQ59EK9 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
RUNDC3AQ59EK9 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
RUNDC3AQ59EK9 MAFF-206ENST00000538320 2458 ntAPPRIS P1 TSL 4 BASIC18.31■□□□□ 0.52
RUNDC3AQ59EK9 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
RUNDC3AQ59EK9 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC18.31■□□□□ 0.52
RUNDC3AQ59EK9 ADGRD2-201ENST00000334810 3244 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
RUNDC3AQ59EK9 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC18.31■□□□□ 0.52
RUNDC3AQ59EK9 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
RUNDC3AQ59EK9 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
RUNDC3AQ59EK9 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
RUNDC3AQ59EK9 SPATA25-201ENST00000372519 757 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
RUNDC3AQ59EK9 METTL26-203ENST00000397664 604 ntTSL 2 BASIC18.31■□□□□ 0.52
RUNDC3AQ59EK9 MIR935-201ENST00000401179 91 ntBASIC18.31■□□□□ 0.52
RUNDC3AQ59EK9 ELOVL2-AS1-201ENST00000456190 737 ntTSL 3 BASIC18.31■□□□□ 0.52
RUNDC3AQ59EK9 HES2-206ENST00000489730 730 ntTSL 2 BASIC18.31■□□□□ 0.52
RUNDC3AQ59EK9 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
RUNDC3AQ59EK9 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
RUNDC3AQ59EK9 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
RUNDC3AQ59EK9 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC18.31■□□□□ 0.52
RUNDC3AQ59EK9 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
RUNDC3AQ59EK9 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
RUNDC3AQ59EK9 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
RUNDC3AQ59EK9 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC18.31■□□□□ 0.52
RUNDC3AQ59EK9 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC18.3■□□□□ 0.52
RUNDC3AQ59EK9 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
RUNDC3AQ59EK9 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
RUNDC3AQ59EK9 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
RUNDC3AQ59EK9 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC18.3■□□□□ 0.52
RUNDC3AQ59EK9 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
RUNDC3AQ59EK9 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
RUNDC3AQ59EK9 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC18.3■□□□□ 0.52
RUNDC3AQ59EK9 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
RUNDC3AQ59EK9 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
RUNDC3AQ59EK9 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
RUNDC3AQ59EK9 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
RUNDC3AQ59EK9 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
RUNDC3AQ59EK9 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
RUNDC3AQ59EK9 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC18.3■□□□□ 0.52
RUNDC3AQ59EK9 AC133552.2-202ENST00000575694 574 ntBASIC18.3■□□□□ 0.52
RUNDC3AQ59EK9 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
RUNDC3AQ59EK9 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
RUNDC3AQ59EK9 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC18.3■□□□□ 0.52
RUNDC3AQ59EK9 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
RUNDC3AQ59EK9 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
RUNDC3AQ59EK9 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
RUNDC3AQ59EK9 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
RUNDC3AQ59EK9 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 22.7 ms