Protein–RNA interactions for Protein: Q4VC31

CCDC58, Coiled-coil domain-containing protein 58, humanhuman

Predictions only

Length 144 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC58Q4VC31 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CCDC58Q4VC31 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
CCDC58Q4VC31 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CCDC58Q4VC31 SASH1-201ENST00000367467 7711 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CCDC58Q4VC31 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CCDC58Q4VC31 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
CCDC58Q4VC31 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CCDC58Q4VC31 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CCDC58Q4VC31 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
CCDC58Q4VC31 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
CCDC58Q4VC31 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
CCDC58Q4VC31 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
CCDC58Q4VC31 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CCDC58Q4VC31 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CCDC58Q4VC31 QSOX2-201ENST00000358701 4530 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
CCDC58Q4VC31 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CCDC58Q4VC31 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
CCDC58Q4VC31 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CCDC58Q4VC31 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC17.32■□□□□ 0.36
CCDC58Q4VC31 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC17.32■□□□□ 0.36
CCDC58Q4VC31 AC013268.1-206ENST00000638368 961 ntBASIC17.32■□□□□ 0.36
CCDC58Q4VC31 AC112229.1-201ENST00000639295 961 ntBASIC17.32■□□□□ 0.36
CCDC58Q4VC31 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC17.32■□□□□ 0.36
CCDC58Q4VC31 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
CCDC58Q4VC31 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC17.32■□□□□ 0.36
CCDC58Q4VC31 FRRS1L-201ENST00000561981 8197 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CCDC58Q4VC31 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
CCDC58Q4VC31 WNK2-202ENST00000395477 6834 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
CCDC58Q4VC31 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
CCDC58Q4VC31 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
CCDC58Q4VC31 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
CCDC58Q4VC31 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC17.32■□□□□ 0.36
CCDC58Q4VC31 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC17.32■□□□□ 0.36
CCDC58Q4VC31 AC020763.4-201ENST00000623414 4170 ntBASIC17.32■□□□□ 0.36
CCDC58Q4VC31 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
CCDC58Q4VC31 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
CCDC58Q4VC31 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CCDC58Q4VC31 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC17.31■□□□□ 0.36
CCDC58Q4VC31 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
CCDC58Q4VC31 CACNA1A-247ENST00000637769 8648 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
CCDC58Q4VC31 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CCDC58Q4VC31 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
CCDC58Q4VC31 AC139713.2-201ENST00000641328 2723 ntBASIC17.31■□□□□ 0.36
CCDC58Q4VC31 ZNF865-201ENST00000568956 4005 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
CCDC58Q4VC31 TNRC18P3-201ENST00000441896 2691 ntBASIC17.31■□□□□ 0.36
CCDC58Q4VC31 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
CCDC58Q4VC31 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC17.31■□□□□ 0.36
CCDC58Q4VC31 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC17.31■□□□□ 0.36
CCDC58Q4VC31 FAM46A-203ENST00000369756 5537 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
CCDC58Q4VC31 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC17.31■□□□□ 0.36
CCDC58Q4VC31 MFSD11-216ENST00000590393 1141 ntBASIC17.31■□□□□ 0.36
CCDC58Q4VC31 AC016405.3-201ENST00000607710 860 ntBASIC17.31■□□□□ 0.36
CCDC58Q4VC31 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CCDC58Q4VC31 AC105020.6-201ENST00000621523 1217 ntBASIC17.31■□□□□ 0.36
CCDC58Q4VC31 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CCDC58Q4VC31 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC17.31■□□□□ 0.36
CCDC58Q4VC31 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
CCDC58Q4VC31 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CCDC58Q4VC31 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CCDC58Q4VC31 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
CCDC58Q4VC31 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC17.31■□□□□ 0.36
CCDC58Q4VC31 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CCDC58Q4VC31 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CCDC58Q4VC31 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC17.31■□□□□ 0.36
CCDC58Q4VC31 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CCDC58Q4VC31 GLDN-201ENST00000335449 4971 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
CCDC58Q4VC31 KCNMA1-278ENST00000640141 5705 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
CCDC58Q4VC31 FBXO6-201ENST00000376753 1520 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CCDC58Q4VC31 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC17.31■□□□□ 0.36
CCDC58Q4VC31 CDH6-205ENST00000514738 2569 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CCDC58Q4VC31 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CCDC58Q4VC31 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CCDC58Q4VC31 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC17.3■□□□□ 0.36
CCDC58Q4VC31 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
CCDC58Q4VC31 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC17.3■□□□□ 0.36
CCDC58Q4VC31 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CCDC58Q4VC31 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC17.3■□□□□ 0.36
CCDC58Q4VC31 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
CCDC58Q4VC31 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CCDC58Q4VC31 ARHGAP35-201ENST00000404338 8889 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CCDC58Q4VC31 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
CCDC58Q4VC31 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
CCDC58Q4VC31 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CCDC58Q4VC31 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC17.3■□□□□ 0.36
CCDC58Q4VC31 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
CCDC58Q4VC31 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
CCDC58Q4VC31 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC17.3■□□□□ 0.36
CCDC58Q4VC31 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC17.3■□□□□ 0.36
CCDC58Q4VC31 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC17.3■□□□□ 0.36
CCDC58Q4VC31 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
CCDC58Q4VC31 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC17.3■□□□□ 0.36
CCDC58Q4VC31 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC17.3■□□□□ 0.36
CCDC58Q4VC31 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC17.3■□□□□ 0.36
CCDC58Q4VC31 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
CCDC58Q4VC31 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CCDC58Q4VC31 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
CCDC58Q4VC31 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CCDC58Q4VC31 AIFM3-203ENST00000405089 2333 ntAPPRIS ALT1 TSL 2 BASIC17.3■□□□□ 0.36
CCDC58Q4VC31 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
CCDC58Q4VC31 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 19.6 ms