Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 AL512604.3-201ENST00000569583 964 ntBASIC23.87■■□□□ 1.41
CCDC88AQ3V6T2 AL691432.3-201ENST00000621860 400 ntBASIC23.87■■□□□ 1.41
CCDC88AQ3V6T2 AL732314.6-201ENST00000627721 484 ntTSL 4 BASIC23.87■■□□□ 1.41
CCDC88AQ3V6T2 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC23.87■■□□□ 1.41
CCDC88AQ3V6T2 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC23.86■■□□□ 1.41
CCDC88AQ3V6T2 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC23.86■■□□□ 1.41
CCDC88AQ3V6T2 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC23.86■■□□□ 1.41
CCDC88AQ3V6T2 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC23.86■■□□□ 1.41
CCDC88AQ3V6T2 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
CCDC88AQ3V6T2 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
CCDC88AQ3V6T2 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
CCDC88AQ3V6T2 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC23.86■■□□□ 1.41
CCDC88AQ3V6T2 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC23.86■■□□□ 1.41
CCDC88AQ3V6T2 HYMAI.1-201ENST00000620949 238 ntBASIC23.86■■□□□ 1.41
CCDC88AQ3V6T2 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
CCDC88AQ3V6T2 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
CCDC88AQ3V6T2 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
CCDC88AQ3V6T2 MBD2-201ENST00000256429 5188 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
CCDC88AQ3V6T2 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC23.86■■□□□ 1.41
CCDC88AQ3V6T2 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC23.85■■□□□ 1.41
CCDC88AQ3V6T2 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC23.85■■□□□ 1.41
CCDC88AQ3V6T2 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC23.85■■□□□ 1.41
CCDC88AQ3V6T2 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC23.85■■□□□ 1.41
CCDC88AQ3V6T2 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC23.85■■□□□ 1.41
CCDC88AQ3V6T2 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC23.85■■□□□ 1.41
CCDC88AQ3V6T2 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC23.85■■□□□ 1.41
CCDC88AQ3V6T2 AL136038.3-201ENST00000561909 1096 ntBASIC23.85■■□□□ 1.41
CCDC88AQ3V6T2 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC23.85■■□□□ 1.41
CCDC88AQ3V6T2 CR769767.2-201ENST00000622735 460 ntBASIC23.85■■□□□ 1.41
CCDC88AQ3V6T2 SMG8-203ENST00000578922 2178 ntBASIC23.85■■□□□ 1.41
CCDC88AQ3V6T2 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC23.85■■□□□ 1.41
CCDC88AQ3V6T2 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC23.85■■□□□ 1.41
CCDC88AQ3V6T2 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC23.85■■□□□ 1.41
CCDC88AQ3V6T2 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC23.85■■□□□ 1.41
CCDC88AQ3V6T2 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
CCDC88AQ3V6T2 ARHGEF7-205ENST00000375739 5375 ntTSL 1 (best) BASIC23.85■■□□□ 1.41
CCDC88AQ3V6T2 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
CCDC88AQ3V6T2 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
CCDC88AQ3V6T2 HBZP1-201ENST00000354915 429 ntBASIC23.85■■□□□ 1.41
CCDC88AQ3V6T2 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC23.85■■□□□ 1.41
CCDC88AQ3V6T2 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC23.85■■□□□ 1.41
CCDC88AQ3V6T2 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC23.85■■□□□ 1.41
CCDC88AQ3V6T2 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC23.85■■□□□ 1.41
CCDC88AQ3V6T2 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC23.85■■□□□ 1.41
CCDC88AQ3V6T2 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC23.85■■□□□ 1.41
CCDC88AQ3V6T2 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC23.85■■□□□ 1.41
CCDC88AQ3V6T2 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC23.84■■□□□ 1.41
CCDC88AQ3V6T2 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC23.84■■□□□ 1.41
CCDC88AQ3V6T2 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC23.84■■□□□ 1.41
CCDC88AQ3V6T2 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC23.84■■□□□ 1.41
CCDC88AQ3V6T2 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC23.84■■□□□ 1.41
CCDC88AQ3V6T2 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
CCDC88AQ3V6T2 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC23.84■■□□□ 1.41
CCDC88AQ3V6T2 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC23.84■■□□□ 1.41
CCDC88AQ3V6T2 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
CCDC88AQ3V6T2 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC23.84■■□□□ 1.41
CCDC88AQ3V6T2 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
CCDC88AQ3V6T2 RYK-208ENST00000620660 2942 ntAPPRIS P3 TSL 1 (best) BASIC23.83■■□□□ 1.41
CCDC88AQ3V6T2 SPDYE15P-201ENST00000424157 909 ntBASIC23.83■■□□□ 1.41
CCDC88AQ3V6T2 AP002433.1-201ENST00000525548 964 ntTSL 3 BASIC23.83■■□□□ 1.41
CCDC88AQ3V6T2 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC23.83■■□□□ 1.41
CCDC88AQ3V6T2 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC23.83■■□□□ 1.41
CCDC88AQ3V6T2 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
CCDC88AQ3V6T2 AC008878.2-201ENST00000601870 942 ntAPPRIS P1 TSL 4 BASIC23.83■■□□□ 1.41
CCDC88AQ3V6T2 BCL10-202ENST00000620248 774 ntTSL 5 BASIC23.83■■□□□ 1.41
CCDC88AQ3V6T2 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC23.83■■□□□ 1.41
CCDC88AQ3V6T2 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC23.83■■□□□ 1.41
CCDC88AQ3V6T2 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC23.83■■□□□ 1.41
CCDC88AQ3V6T2 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC23.83■■□□□ 1.4
CCDC88AQ3V6T2 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC23.83■■□□□ 1.4
CCDC88AQ3V6T2 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC23.83■■□□□ 1.4
CCDC88AQ3V6T2 NDUFB10-202ENST00000543683 830 ntTSL 1 (best) BASIC23.83■■□□□ 1.4
CCDC88AQ3V6T2 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC23.83■■□□□ 1.4
CCDC88AQ3V6T2 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC23.83■■□□□ 1.4
CCDC88AQ3V6T2 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.4
CCDC88AQ3V6T2 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
CCDC88AQ3V6T2 AP001271.2-201ENST00000624018 1556 ntBASIC23.82■■□□□ 1.4
CCDC88AQ3V6T2 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC23.82■■□□□ 1.4
CCDC88AQ3V6T2 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC23.82■■□□□ 1.4
CCDC88AQ3V6T2 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC23.82■■□□□ 1.4
CCDC88AQ3V6T2 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC23.82■■□□□ 1.4
CCDC88AQ3V6T2 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC23.82■■□□□ 1.4
CCDC88AQ3V6T2 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
CCDC88AQ3V6T2 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC23.82■■□□□ 1.4
CCDC88AQ3V6T2 KRT16P6-202ENST00000425692 1426 ntBASIC23.82■■□□□ 1.4
CCDC88AQ3V6T2 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
CCDC88AQ3V6T2 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
CCDC88AQ3V6T2 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
CCDC88AQ3V6T2 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC23.82■■□□□ 1.4
CCDC88AQ3V6T2 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC23.81■■□□□ 1.4
CCDC88AQ3V6T2 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC23.81■■□□□ 1.4
CCDC88AQ3V6T2 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
CCDC88AQ3V6T2 MIR3652-201ENST00000579335 131 ntBASIC23.81■■□□□ 1.4
CCDC88AQ3V6T2 MIR3180-1-201ENST00000580374 94 ntBASIC23.81■■□□□ 1.4
CCDC88AQ3V6T2 MIR3180-3-201ENST00000584616 94 ntBASIC23.81■■□□□ 1.4
CCDC88AQ3V6T2 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC23.81■■□□□ 1.4
CCDC88AQ3V6T2 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC23.81■■□□□ 1.4
CCDC88AQ3V6T2 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
CCDC88AQ3V6T2 ARHGEF7-206ENST00000375741 5525 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
CCDC88AQ3V6T2 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
Retrieved 100 of 98,524 protein–RNA pairs in 24.7 ms