Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
USP41Q3LFD5 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
USP41Q3LFD5 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
USP41Q3LFD5 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC20.67■□□□□ 0.9
USP41Q3LFD5 BX664615.1-201ENST00000443558 458 ntBASIC20.67■□□□□ 0.9
USP41Q3LFD5 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC20.67■□□□□ 0.9
USP41Q3LFD5 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC20.67■□□□□ 0.9
USP41Q3LFD5 AC006011.2-201ENST00000621313 1158 ntBASIC20.67■□□□□ 0.9
USP41Q3LFD5 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC20.67■□□□□ 0.9
USP41Q3LFD5 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
USP41Q3LFD5 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC20.67■□□□□ 0.9
USP41Q3LFD5 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
USP41Q3LFD5 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
USP41Q3LFD5 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
USP41Q3LFD5 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC20.67■□□□□ 0.9
USP41Q3LFD5 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC20.67■□□□□ 0.9
USP41Q3LFD5 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
USP41Q3LFD5 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC20.66■□□□□ 0.9
USP41Q3LFD5 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
USP41Q3LFD5 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
USP41Q3LFD5 NUDT8-201ENST00000301490 809 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
USP41Q3LFD5 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
USP41Q3LFD5 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
USP41Q3LFD5 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
USP41Q3LFD5 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC20.66■□□□□ 0.9
USP41Q3LFD5 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC20.66■□□□□ 0.9
USP41Q3LFD5 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC20.66■□□□□ 0.9
USP41Q3LFD5 NTF6B-201ENST00000591913 560 ntBASIC20.66■□□□□ 0.9
USP41Q3LFD5 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
USP41Q3LFD5 BDKRB1-204ENST00000611804 1085 ntAPPRIS P1 BASIC20.66■□□□□ 0.9
USP41Q3LFD5 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
USP41Q3LFD5 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
USP41Q3LFD5 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
USP41Q3LFD5 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC20.66■□□□□ 0.9
USP41Q3LFD5 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
USP41Q3LFD5 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC20.66■□□□□ 0.9
USP41Q3LFD5 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC20.66■□□□□ 0.9
USP41Q3LFD5 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
USP41Q3LFD5 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
USP41Q3LFD5 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC20.66■□□□□ 0.9
USP41Q3LFD5 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
USP41Q3LFD5 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
USP41Q3LFD5 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
USP41Q3LFD5 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
USP41Q3LFD5 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC20.65■□□□□ 0.9
USP41Q3LFD5 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC20.65■□□□□ 0.9
USP41Q3LFD5 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC20.65■□□□□ 0.9
USP41Q3LFD5 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC20.65■□□□□ 0.9
USP41Q3LFD5 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC20.65■□□□□ 0.9
USP41Q3LFD5 RNF146-204ENST00000476956 884 ntTSL 2 BASIC20.65■□□□□ 0.9
USP41Q3LFD5 LTBR-211ENST00000543190 785 ntTSL 3 BASIC20.65■□□□□ 0.9
USP41Q3LFD5 CBFB-203ENST00000561924 584 ntTSL 5 BASIC20.65■□□□□ 0.9
USP41Q3LFD5 GPX4-207ENST00000589115 812 ntTSL 2 BASIC20.65■□□□□ 0.9
USP41Q3LFD5 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC20.65■□□□□ 0.9
USP41Q3LFD5 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC20.65■□□□□ 0.9
USP41Q3LFD5 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
USP41Q3LFD5 AL512408.1-201ENST00000569378 2000 ntBASIC20.65■□□□□ 0.9
USP41Q3LFD5 AP005212.1-201ENST00000581547 1997 ntBASIC20.65■□□□□ 0.9
USP41Q3LFD5 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
USP41Q3LFD5 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
USP41Q3LFD5 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.89
USP41Q3LFD5 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.89
USP41Q3LFD5 RRAS-201ENST00000246792 1044 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
USP41Q3LFD5 UBL5-201ENST00000358666 513 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
USP41Q3LFD5 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC20.64■□□□□ 0.89
USP41Q3LFD5 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC20.64■□□□□ 0.89
USP41Q3LFD5 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC20.64■□□□□ 0.89
USP41Q3LFD5 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
USP41Q3LFD5 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC20.64■□□□□ 0.89
USP41Q3LFD5 AC004540.1-203ENST00000421862 907 ntTSL 5 BASIC20.64■□□□□ 0.89
USP41Q3LFD5 GOLGA2P7-203ENST00000557881 896 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
USP41Q3LFD5 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC20.64■□□□□ 0.89
USP41Q3LFD5 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC20.64■□□□□ 0.89
USP41Q3LFD5 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
USP41Q3LFD5 AC010653.2-201ENST00000623505 997 ntBASIC20.64■□□□□ 0.89
USP41Q3LFD5 RNF165-205ENST00000588679 2904 ntBASIC20.64■□□□□ 0.89
USP41Q3LFD5 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
USP41Q3LFD5 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC20.64■□□□□ 0.89
USP41Q3LFD5 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
USP41Q3LFD5 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
USP41Q3LFD5 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC20.64■□□□□ 0.89
USP41Q3LFD5 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
USP41Q3LFD5 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC20.64■□□□□ 0.89
USP41Q3LFD5 AC009237.14-201ENST00000609975 1594 ntBASIC20.63■□□□□ 0.89
USP41Q3LFD5 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
USP41Q3LFD5 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
USP41Q3LFD5 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
USP41Q3LFD5 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
USP41Q3LFD5 AL691432.2-201ENST00000607222 2038 ntBASIC20.63■□□□□ 0.89
USP41Q3LFD5 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
USP41Q3LFD5 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
USP41Q3LFD5 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC20.63■□□□□ 0.89
USP41Q3LFD5 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
USP41Q3LFD5 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC20.63■□□□□ 0.89
USP41Q3LFD5 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
USP41Q3LFD5 AC007663.1-201ENST00000438948 1240 ntBASIC20.63■□□□□ 0.89
USP41Q3LFD5 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC20.63■□□□□ 0.89
USP41Q3LFD5 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
USP41Q3LFD5 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
USP41Q3LFD5 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 26.7 ms