Protein–RNA interactions for Protein: P56589

PEX3, Peroxisomal biogenesis factor 3, humanhuman

Predictions only

Length 373 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PEX3P56589 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
PEX3P56589 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
PEX3P56589 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC21.43■■□□□ 1.02
PEX3P56589 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC21.43■■□□□ 1.02
PEX3P56589 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
PEX3P56589 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
PEX3P56589 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
PEX3P56589 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
PEX3P56589 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC21.43■■□□□ 1.02
PEX3P56589 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
PEX3P56589 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC21.43■■□□□ 1.02
PEX3P56589 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
PEX3P56589 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
PEX3P56589 PENK-204ENST00000518770 863 ntTSL 2 BASIC21.43■■□□□ 1.02
PEX3P56589 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC21.43■■□□□ 1.02
PEX3P56589 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC21.43■■□□□ 1.02
PEX3P56589 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC21.43■■□□□ 1.02
PEX3P56589 LINC02167-201ENST00000562769 594 ntTSL 3 BASIC21.43■■□□□ 1.02
PEX3P56589 GRAP-204ENST00000573099 846 ntTSL 3 BASIC21.43■■□□□ 1.02
PEX3P56589 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC21.43■■□□□ 1.02
PEX3P56589 AL445675.2-201ENST00000620291 557 ntBASIC21.43■■□□□ 1.02
PEX3P56589 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC21.43■■□□□ 1.02
PEX3P56589 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC21.43■■□□□ 1.02
PEX3P56589 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC21.43■■□□□ 1.02
PEX3P56589 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC21.43■■□□□ 1.02
PEX3P56589 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC21.43■■□□□ 1.02
PEX3P56589 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC21.43■■□□□ 1.02
PEX3P56589 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
PEX3P56589 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
PEX3P56589 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
PEX3P56589 BIK-201ENST00000216115 953 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
PEX3P56589 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
PEX3P56589 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
PEX3P56589 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC21.42■■□□□ 1.02
PEX3P56589 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
PEX3P56589 RBP4-202ENST00000371467 1314 ntAPPRIS P1 TSL 5 BASIC21.42■■□□□ 1.02
PEX3P56589 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
PEX3P56589 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC21.42■■□□□ 1.02
PEX3P56589 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC21.42■■□□□ 1.02
PEX3P56589 KRT16P1-201ENST00000399124 1418 ntBASIC21.42■■□□□ 1.02
PEX3P56589 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
PEX3P56589 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC21.42■■□□□ 1.02
PEX3P56589 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC21.42■■□□□ 1.02
PEX3P56589 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC21.42■■□□□ 1.02
PEX3P56589 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC21.42■■□□□ 1.02
PEX3P56589 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC21.42■■□□□ 1.02
PEX3P56589 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC21.42■■□□□ 1.02
PEX3P56589 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC21.42■■□□□ 1.02
PEX3P56589 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
PEX3P56589 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC21.42■■□□□ 1.02
PEX3P56589 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC21.42■■□□□ 1.02
PEX3P56589 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
PEX3P56589 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
PEX3P56589 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
PEX3P56589 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC21.41■■□□□ 1.02
PEX3P56589 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
PEX3P56589 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
PEX3P56589 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
PEX3P56589 SRI-203ENST00000419179 1307 ntTSL 2 BASIC21.41■■□□□ 1.02
PEX3P56589 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC21.41■■□□□ 1.02
PEX3P56589 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
PEX3P56589 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
PEX3P56589 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC21.41■■□□□ 1.02
PEX3P56589 MIR4497-201ENST00000583208 89 ntBASIC21.41■■□□□ 1.02
PEX3P56589 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
PEX3P56589 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
PEX3P56589 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC21.4■■□□□ 1.02
PEX3P56589 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
PEX3P56589 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC21.4■■□□□ 1.02
PEX3P56589 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC21.4■■□□□ 1.02
PEX3P56589 ANKRD18DP-204ENST00000455355 1975 ntBASIC21.4■■□□□ 1.02
PEX3P56589 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC21.4■■□□□ 1.02
PEX3P56589 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC21.4■■□□□ 1.02
PEX3P56589 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
PEX3P56589 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC21.4■■□□□ 1.02
PEX3P56589 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC21.4■■□□□ 1.02
PEX3P56589 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC21.4■■□□□ 1.02
PEX3P56589 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
PEX3P56589 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC21.4■■□□□ 1.02
PEX3P56589 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
PEX3P56589 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
PEX3P56589 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC21.4■■□□□ 1.02
PEX3P56589 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC21.4■■□□□ 1.02
PEX3P56589 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC21.4■■□□□ 1.02
PEX3P56589 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC21.4■■□□□ 1.02
PEX3P56589 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC21.39■■□□□ 1.02
PEX3P56589 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC21.39■■□□□ 1.02
PEX3P56589 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
PEX3P56589 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC21.39■■□□□ 1.02
PEX3P56589 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC21.39■■□□□ 1.02
PEX3P56589 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC21.39■■□□□ 1.01
PEX3P56589 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
PEX3P56589 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
PEX3P56589 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
PEX3P56589 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
PEX3P56589 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
PEX3P56589 PPP1R14BP5-201ENST00000440334 435 ntBASIC21.39■■□□□ 1.01
PEX3P56589 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC21.39■■□□□ 1.01
PEX3P56589 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC21.39■■□□□ 1.01
PEX3P56589 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC21.39■■□□□ 1.01
Retrieved 100 of 98,524 protein–RNA pairs in 106.2 ms