Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC20.33■□□□□ 0.84
LIG3P49916 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
LIG3P49916 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC20.33■□□□□ 0.84
LIG3P49916 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC20.33■□□□□ 0.84
LIG3P49916 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC20.33■□□□□ 0.84
LIG3P49916 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
LIG3P49916 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC20.32■□□□□ 0.84
LIG3P49916 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC20.32■□□□□ 0.84
LIG3P49916 FAM91A1-201ENST00000334705 5511 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
LIG3P49916 EPB41L3-207ENST00000545076 3190 ntAPPRIS ALT2 TSL 2 BASIC20.32■□□□□ 0.84
LIG3P49916 PHB2-201ENST00000399433 1308 ntAPPRIS ALT1 TSL 2 BASIC20.32■□□□□ 0.84
LIG3P49916 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
LIG3P49916 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
LIG3P49916 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
LIG3P49916 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC20.32■□□□□ 0.84
LIG3P49916 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
LIG3P49916 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
LIG3P49916 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC20.32■□□□□ 0.84
LIG3P49916 FAM201B-201ENST00000458407 597 ntBASIC20.32■□□□□ 0.84
LIG3P49916 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC20.32■□□□□ 0.84
LIG3P49916 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC20.32■□□□□ 0.84
LIG3P49916 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC20.32■□□□□ 0.84
LIG3P49916 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
LIG3P49916 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
LIG3P49916 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
LIG3P49916 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
LIG3P49916 KANK4-204ENST00000371153 4665 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
LIG3P49916 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC20.32■□□□□ 0.84
LIG3P49916 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
LIG3P49916 PCDHB18P-201ENST00000524813 2368 ntBASIC20.31■□□□□ 0.84
LIG3P49916 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC20.31■□□□□ 0.84
LIG3P49916 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC20.31■□□□□ 0.84
LIG3P49916 TMC5-203ENST00000396229 4917 ntAPPRIS ALT2 TSL 5 BASIC20.31■□□□□ 0.84
LIG3P49916 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
LIG3P49916 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
LIG3P49916 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
LIG3P49916 GAS7-202ENST00000396115 929 ntTSL 5 BASIC20.31■□□□□ 0.84
LIG3P49916 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC20.31■□□□□ 0.84
LIG3P49916 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC20.31■□□□□ 0.84
LIG3P49916 AC060766.5-201ENST00000590539 871 ntBASIC20.31■□□□□ 0.84
LIG3P49916 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
LIG3P49916 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC20.31■□□□□ 0.84
LIG3P49916 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC20.31■□□□□ 0.84
LIG3P49916 HSF2-201ENST00000368455 2549 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
LIG3P49916 ANKRD9-201ENST00000286918 6727 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
LIG3P49916 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
LIG3P49916 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC20.31■□□□□ 0.84
LIG3P49916 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
LIG3P49916 STK25-205ENST00000405883 1904 ntTSL 2 BASIC20.31■□□□□ 0.84
LIG3P49916 CRK-204ENST00000574295 1391 ntTSL 5 BASIC20.31■□□□□ 0.84
LIG3P49916 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC20.31■□□□□ 0.84
LIG3P49916 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
LIG3P49916 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
LIG3P49916 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
LIG3P49916 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
LIG3P49916 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
LIG3P49916 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
LIG3P49916 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC20.3■□□□□ 0.84
LIG3P49916 KRT8P36-201ENST00000489121 1440 ntBASIC20.3■□□□□ 0.84
LIG3P49916 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC20.3■□□□□ 0.84
LIG3P49916 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC20.3■□□□□ 0.84
LIG3P49916 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
LIG3P49916 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC20.3■□□□□ 0.84
LIG3P49916 MRAP-201ENST00000303645 935 ntAPPRIS P4 TSL 1 (best) BASIC20.3■□□□□ 0.84
LIG3P49916 SPATA25-201ENST00000372519 757 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
LIG3P49916 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC20.3■□□□□ 0.84
LIG3P49916 BRWD1-AS2-201ENST00000603064 1028 ntBASIC20.3■□□□□ 0.84
LIG3P49916 AC020916.1-201ENST00000587762 1774 ntBASIC20.3■□□□□ 0.84
LIG3P49916 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC20.3■□□□□ 0.84
LIG3P49916 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC20.3■□□□□ 0.84
LIG3P49916 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC20.3■□□□□ 0.84
LIG3P49916 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
LIG3P49916 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC20.3■□□□□ 0.84
LIG3P49916 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
LIG3P49916 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC20.3■□□□□ 0.84
LIG3P49916 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC20.3■□□□□ 0.84
LIG3P49916 AL133373.2-201ENST00000623187 2828 ntBASIC20.3■□□□□ 0.84
LIG3P49916 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC20.3■□□□□ 0.84
LIG3P49916 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
LIG3P49916 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
LIG3P49916 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
LIG3P49916 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC20.29■□□□□ 0.84
LIG3P49916 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC20.29■□□□□ 0.84
LIG3P49916 AC013269.1-201ENST00000409259 1653 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
LIG3P49916 TISP43-206ENST00000623376 1653 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
LIG3P49916 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
LIG3P49916 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
LIG3P49916 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
LIG3P49916 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC20.29■□□□□ 0.84
LIG3P49916 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC20.29■□□□□ 0.84
LIG3P49916 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
LIG3P49916 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
LIG3P49916 AC004882.1-201ENST00000416352 590 ntTSL 3 BASIC20.29■□□□□ 0.84
LIG3P49916 POU5F1P3-201ENST00000428824 1078 ntBASIC20.29■□□□□ 0.84
LIG3P49916 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC20.29■□□□□ 0.84
LIG3P49916 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC20.29■□□□□ 0.84
LIG3P49916 UNC93B5-201ENST00000530315 699 ntBASIC20.29■□□□□ 0.84
LIG3P49916 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
LIG3P49916 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
LIG3P49916 CLMP-201ENST00000448775 5072 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 44.8 ms